Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01240 ATGGGGGCCTCAGGAAAATGGGTAAAAGCAATAATCGGACTCAAGAAACCAGAGAAAGATGGACAACATCCAAAGGAGGGTGGTAAGAGCAAGAAGTGGAGGTTATGGAGGAGTTCTTCAGGGGATACGAGTTCATGGAAAGGTTTCAAAGGAAACCACAAAGCAGCTTCTGAAGGGTCTGATTCACCACCTGCATCAAATGCTTTTACCGCTGCAGTGGCTACCGTGGTTAGAGCACCACCCAAAGATTTTAGACTTGTTAGGCAAGAATGGGCAGCTATAAGAATACAAACTGCTTTCCGAGCCTTCTTGGCAAGAAGGGCCTTGAGGGCTTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTCCGTGGTAGACAGGTGAGGAAGCAGGCTGCAGTAACTTTAAGGTGCATGCAGGCCCTAGTTCGGGTTCAAGCCAGAGTAAGAGCTTGTCGTGTGAGGATGTCCATAGAGGGGCAAGCTGTGCAGAACATGCTTAAAGAGAGACGTAGCAAGCTTGAGCTATTGAAGGAAGCAGAGGAAGGGTGGTGTGATAGTAGAGGAACATTGGAAGATGTTAAAGCAAAAATACAAATGAGGCAAGAAGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCTCAGAAGCCATGCAGGTCAACCACCCCAAGCACTAATTCACGAACAAATGCCTCGTTTTCTTCTGTCAAAAATCACGAGTTTAACAAAGCTAACTCTGGGTGGAGTTGGTTGGAACGATGGATGGCAGCTAAGCCCTGGGAGAGTAGATTGATGGAAGAATCTCAAGCTGAAGGCTTAGATAAAACCCCACCTCCAAAGAAATTTGTGGAATCCTTTGTAAGTTCTAAGTCAAAACCATGCTTGGTCAATATCAAGAAGAACAATGTCACAACAAGGATTTCTGCCAGGCCTCCCCATATTGGACAAGCTACTCGTTCATCCTCAAGTCCAAGTTCAGAGTTTCGGTATGATGAGAGTTCTGCATCATCATCTATTTGTACATCCACAACACCAATGTCAGGAAATACTTGTGATAGGACTGAGGATAGTAGTAACACTAGGCCTAATTACATGAACCTGACTCAGTCATCAAAGGCAAAGCTAAAAACGAGTAATCAAATGTATAATAGAGCTCAAAGGCAGCAATCCATGGATGAGTTTCAATTTCTCAAGAGGGCAGCGGTTTTCTCAAATGGAGATTCCAAAAGCATTGCTGGTTCTGACCATTCTGTCAACTTTTCTAGGCCACTTCACCTACCAACTCACTTGGACAAGAGCTCACCGCGGTGA 1317 0.4525 MGASGKWVKAIIGLKKPEKDGQHPKEGGKSKKWRLWRSSSGDTSSWKGFKGNHKAASEGSDSPPASNAFTAAVATVVRAPPKDFRLVRQEWAAIRIQTAFRAFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRACRVRMSIEGQAVQNMLKERRSKLELLKEAEEGWCDSRGTLEDVKAKIQMRQEGAFKRERAIAYSLAQKPCRSTTPSTNSRTNASFSSVKNHEFNKANSGWSWLERWMAAKPWESRLMEESQAEGLDKTPPPKKFVESFVSSKSKPCLVNIKKNNVTTRISARPPHIGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCDRTEDSSNTRPNYMNLTQSSKAKLKTSNQMYNRAQRQQSMDEFQFLKRAAVFSNGDSKSIAGSDHSVNFSRPLHLPTHLDKSSPR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01240 438 MobiDBLite consensus disorder prediction 308 367 - -
Rops10g01240 438 PANTHER IQ-DOMAIN 5-RELATED 1 409 - -
Rops10g01240 438 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Rops10g01240 438 MobiDBLite consensus disorder prediction 12 36 - -
Rops10g01240 438 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Rops10g01240 438 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Rops10g01240 438 MobiDBLite consensus disorder prediction 408 438 - -
Rops10g01240 438 MobiDBLite consensus disorder prediction 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01240 Rops-Chr10 24974292 24976700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01240 1 434 IQD Protein Family AT2G26180 61.276 4.17e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01240 - - gmx:100799714 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02045 9 37692270 37699873 Rops10g01240 10 24974292 24976700 PCT