Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01234 ATGAAAGATTTGGGGGTAGATGAAACTATGTCAAATTTGACATCTGCATCAAGTGAAGTAAGTGCTTCTTCCGGGACCAAGAATGACACTGGTCCTCTCCATCCTCTACACTCTTCTACTTCAACAATTCAGGAACCACCGCCTAAAAAGATGAGAAATCTTAGAGGACACCCAGATCCTGAGGCTGAAGTGATAGCCTTGTCTCCCAACACCCTCTTGGCAACAAACAGGTTCATTTGTGATATTTGTAACAAAGGGTTTCAAAGAGAGCAGAATCTGCAACTGCATAGAAGAGGGCATAATCTGCCATGGAAGCTAAAGCAAAGAAGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAGCGTTACGCGGTTAAATCAGATTGGAAAGCTCAATCCAAATTCGTGGACCAGAGAGTACAAATGTGACTGTGGAACCATTTTCTCTAGAAGGGACAGTTTCATCGCCCACAGGGCCTTCTGTGATGCTCTAGCACAAGAGAGTACTAAAACACTCACAGCACTGAATCCTTACCTTTCCTCACACATCCAACTTCATAGCCAAGGCTTCCAAGCACCATCAATGAAAAAGGAACAAGAAGTGAATTTAAGACCAGAAATTCCATCATTGTTTGCTTACCCACCACCGGTTGGAGAAGCTGGAAACCCTAACCCTACTATTTTTCTTCCTTCTTTTCAATCCATAGCTTCTCCTCATATGTCTGCCACTGCTTTGTTGCAAAAAGCGTCACAAATAGGTGTCACCACAGTGAGCAAAACTGCACCTTCTCTAGACATGCTTAGACCCCATCAACAACAGGCTCACGTGCCTGGATGTACTGCAGGATATAGCTCCTTGTCATTGGCTTCATCTTCGGTTGTTTCTGGATTGGATATGCCTTCACGTGAAGAAATTGGGACCGGAATATTTCATCATGGTTTGGCATCATATGGGAATAAAGCTGGGATCATCTCTGAGTTCTTGGAAGAAGGTGCCACTAATAATAATAATACAGGAGCTGAAGCAGCTTCTCTTATTCATGATATGATGGATACTACTGTGACTTCTGTTAATCCTTTTGAGAGGTCATCATCCTTTGAGGAAGCTCTAAGGGGAATGATGAATCCTATGAGAGATAATAACTTTCAGGAACAATGGAAATCAGTGGAGTCCCATTTAAGTAAAAGCAACAATGCCATTGCTGGGGGTGCCAAAGAAGAGACAAGAGATTTTCTGGGTCTTAGAGTATTTTCTCAAAGAGACCTTTTCAATATATCTGGGCTCGAACATTTGGGTTCTTCCTCATATGGCAAGCAAAATCAGAACCAACCACCTTGGCAAAGTTGA 1356 0.427 MKDLGVDETMSNLTSASSEVSASSGTKNDTGPLHPLHSSTSTIQEPPPKKMRNLRGHPDPEAEVIALSPNTLLATNRFICDICNKGFQREQNLQLHRRGHNLPWKLKQRRSMERRNGSVRSAQSVTRLNQIGKLNPNSWTREYKCDCGTIFSRRDSFIAHRAFCDALAQESTKTLTALNPYLSSHIQLHSQGFQAPSMKKEQEVNLRPEIPSLFAYPPPVGEAGNPNPTIFLPSFQSIASPHMSATALLQKASQIGVTTVSKTAPSLDMLRPHQQQAHVPGCTAGYSSLSLASSSVVSGLDMPSREEIGTGIFHHGLASYGNKAGIISEFLEEGATNNNNTGAEAASLIHDMMDTTVTSVNPFERSSSFEEALRGMMNPMRDNNFQEQWKSVESHLSKSNNAIAGGAKEETRDFLGLRVFSQRDLFNISGLEHLGSSSYGKQNQNQPPWQS* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01234 451 SMART c2h2final6 78 100 IPR013087 -
Rops10g01234 451 Pfam Zinc-finger double-stranded RNA-binding 78 100 IPR022755 -
Rops10g01234 451 MobiDBLite consensus disorder prediction 8 47 - -
Rops10g01234 451 Gene3D Classic Zinc Finger 75 163 - -
Rops10g01234 451 SUPERFAMILY beta-beta-alpha zinc fingers 77 161 IPR036236 -
Rops10g01234 451 MobiDBLite consensus disorder prediction 1 57 - -
Rops10g01234 451 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Rops10g01234 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Rops10g01234 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 115 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01234 Rops-Chr10 24890377 24892423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01234 6 258 IDZ Gene Family AT1G55110 39.264 2.30e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops10g01234 zf-C2H2_jaz 4.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01234 K25870 - vvi:100257789 401.364