Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01226 ATGAGAATAGCTAGGAAATGCTCATATTGTGGAAACTTGGGTCACAATTCAAGGACTTGTAACAACAGTCTGGGTTACAAACAAATAAGGCTCTTTGGAGTGCAACTTGACGTTTCTTCTTCTTCTTCATCTTCCTCGAATTCTTCTTCAGCTTTAAATTTTGCCACAAAAAGAAGTTTCAGCATGGACTGCCTGTTTGGTGCAAATGAAAATTCAGATAGTTACTTAGCTAGTGCCAGTAGCCTCCTATCAACAATCCAAGACAGCAAAAAAGGTGTGACATGGACGGAGGAGGAGCACCGGGTATTTCTTATTGGGCTTGAGAAGCTTGGCAAGGGTGACTGGAGAGGCATATCTAAAAATTTTGTGACAACCAGAACACCAACCCAAGTGGCCAGTCATGCACAAAAATATTTTCTCAGTTGGTCTCAGAACAACTTCAATGGAAGAAAACACCGTCCCTGCCAGCTTGCTGTGGGAAATGAAAGTAAAACCATATTAAAACCATTTAATAATTGCTTTTCTAAACAAAGTGAAGCTGTTAGTCCATTTGGGTTCCAATCAAGGATAACTAATTTGACTTCAAATGATATCAACCATATCAGTCAATTAAGTGGCAATCGGAATTTTCTTTCTCAGTGGCCTTGGCATCCTCATTCAACTTCATCAAATTGCAGTGCTGAGAGCGCAGCCCCTGATTTAGAACTCAAACTTGCAACTCCTAATGCATTGGGGAGCTAA 741 0.4049 MRIARKCSYCGNLGHNSRTCNNSLGYKQIRLFGVQLDVSSSSSSSSNSSSALNFATKRSFSMDCLFGANENSDSYLASASSLLSTIQDSKKGVTWTEEEHRVFLIGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKYFLSWSQNNFNGRKHRPCQLAVGNESKTILKPFNNCFSKQSEAVSPFGFQSRITNLTSNDINHISQLSGNRNFLSQWPWHPHSTSSNCSAESAAPDLELKLATPNALGS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01226 246 FunFam transcription factor MYB1R1 93 144 - -
Rops10g01226 246 PANTHER TRANSCRIPTION FACTOR KUA1 5 162 - -
Rops10g01226 246 ProSiteProfiles SANT domain profile. 95 146 IPR017884 -
Rops10g01226 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 144 IPR017930 -
Rops10g01226 246 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Rops10g01226 246 SMART sant 91 141 IPR001005 -
Rops10g01226 246 Gene3D - 93 144 - -
Rops10g01226 246 SUPERFAMILY Homeodomain-like 89 143 IPR009057 -
Rops10g01226 246 CDD SANT 94 139 IPR001005 -
Rops10g01226 246 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Rops10g01226 246 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 140 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01226 Rops-Chr10 24792996 24794191 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g01226 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01226 - - aprc:113866246 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01226 10 24792996 24794191 Rops10g01226 10 24792996 24794191 ECH