Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01225 ATGGGCCCGTACCAAGAGTTGTTACATTTACTACTTGTTATGGAGAATGACATGTACATTGCTCCACTGATCATTTCTGGGAGAGATTCTACTGTAGTAGATGAAATTTCACAACATTCCACCTCAAATCCACTCATTCAGTGCAATTCATTTGACCGTAACAACCAATCCCATATCATAAATGCAATTTCAATGCTTGCTGTAGAGCAAGGTGAACCTACAAGTAATGTCCCTGCTGATGTTTGCTTCATAAATCCTGTTAGTGTTGCTGACTCTAGTTCATTAGCTACATCACAAGGAAAGACTGTCATGGTAGATGCCTCAAATCACATGGAGAACAGTGAGTTTCAAGAGCATTTAACAGGAGGAATGCCAATTACTCCTGCTTCATTTGCTGCCATTCTTGCTGCCAGATTTGGTTTGGAAGAAAATTTAGAGAATTCAGCAGGTTTGCCTCCTTCACTCTGCTCAATGGGGGCACAGGGATCATTTTTCAATAATTGGCAAGGCACTTCAAATCCTTTGCCTGCAACCTTTGAGGACCGCAGTTACAATGAAGTACCTGGTAATGGTACGTGCCAACTTTATACTTCCATAGGAAACCTGGATCCAGATGGATGGGCATCATCAAATGTTGTAAACATGATCAATAATTCTTACCATTCCTCTAACTTAAGTAATGAACTTTCTTTAAGTCTTGCAACATCTACAACCCCAGGACAGTGCTCAGAGGTCAGTTGCTCTGATGTGACTCAATGCGTGAATGGAATCATGTCAGGCTTGCAGCAAGCCTCCTGCAGCAGCAGTAGGGAACTTTCAATGAATTTGGGTTGTAATAAATATGTATATTTTTCATCAGAAGTATTGGGACCAAGATACCTTATTGGAATTCAAGAGATACTGGCTCAAATTGCAAGATATTCATTTGAAAATCTAGAACAGATAAATTGTTCTGTTGCTGGTACTAGAGCAGGTGGAAATAAATCAACTTCAGCTTTCCCACCCAAGAGAAGGGTATTGATTAATGACAATGCAAATTCTATGCATGAAGCTCATGCAGAACCTCCATTGCAAAGGCATGCAGCTGAATCAAAGAAATCCCAACTGCTGACACTTCTACAACTGGTGGACAGTAGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCATGCTGCTACAGAGCTGGACCCACGGATACATGCACATTTTGCTCTTCAAACTGTCTCTATTCTATACAAGGACTTGCGAGAGAGGATTAGCAATTATATTCTTGCCATGGGATCAAACTTCAATGACTTGTGCTCAGAAGAGAAGGAACGGTCTGTTGAAACTTACTTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCATCAGTTATGGAGACCTCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGGGCTTGGATGTTTCAGAATTTCCTTCATCCGTATCCTAAGGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAACTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCTATGATTGACGAAATGTATACTGAAGTGAATAAAAGAAAGGTGTGTCGAAATGAAGAAGGAATGGAGAGCAGCCACGGAAACAGGATAAGCATGAGCAATCAAAGGTTTAATGTCAATTGA 1707 0.4101 MGPYQELLHLLLVMENDMYIAPLIISGRDSTVVDEISQHSTSNPLIQCNSFDRNNQSHIINAISMLAVEQGEPTSNVPADVCFINPVSVADSSSLATSQGKTVMVDASNHMENSEFQEHLTGGMPITPASFAAILAARFGLEENLENSAGLPPSLCSMGAQGSFFNNWQGTSNPLPATFEDRSYNEVPGNGTCQLYTSIGNLDPDGWASSNVVNMINNSYHSSNLSNELSLSLATSTTPGQCSEVSCSDVTQCVNGIMSGLQQASCSSSRELSMNLGCNKYVYFSSEVLGPRYLIGIQEILAQIARYSFENLEQINCSVAGTRAGGNKSTSAFPPKRRVLINDNANSMHEAHAEPPLQRHAAESKKSQLLTLLQLVDSRYSQCLDEIHTVVSAFHAATELDPRIHAHFALQTVSILYKDLRERISNYILAMGSNFNDLCSEEKERSVETYFLQKQWALQQLKRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIDEMYTEVNKRKVCRNEEGMESSHGNRISMSNQRFNVN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01225 568 ProSiteProfiles 'Homeobox' domain profile. 466 529 IPR001356 GO:0003677
Rops10g01225 568 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 218 551 - -
Rops10g01225 568 SUPERFAMILY Homeodomain-like 471 537 IPR009057 -
Rops10g01225 568 Gene3D - 463 543 - -
Rops10g01225 568 SMART prehox3 282 426 IPR006563 -
Rops10g01225 568 CDD homeodomain 469 530 IPR001356 GO:0003677
Rops10g01225 568 SMART HOX_1 469 533 IPR001356 GO:0003677
Rops10g01225 568 Pfam Homeobox KN domain 486 525 IPR008422 GO:0003677|GO:0006355
Rops10g01225 568 Pfam Associated with HOX 290 425 IPR006563 -
Rops10g01225 568 MobiDBLite consensus disorder prediction 547 568 - -
Rops10g01225 568 MobiDBLite consensus disorder prediction 553 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01225 Rops-Chr10 24784967 24788017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01225 222 543 Homeobox Transcription Factor Family AT4G32980 55.556 3.26e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops10g01225 POX 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01225 - - gmx:100820354 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01225 10 24784967 24788017 Rops10g01225 10 24784967 24788017 ECH
Rops9g02072 9 38075974 38078844 Rops10g01225 10 24784967 24788017 PCT