Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01223 ATGTTGCATGTTGATAATAAGAGTATAGTTATCATTGCATGCAAGTTTCCAAGCCGTGGAGAATCTACTTGGGATGAAAAAATCGATCAGATTCATGACAAAACAGAAATTAGCTTGTGGGAGAGAATTGGTAAAGCTGAAATCTTGGACATTGAATCGGGCTCCTTTTCTTGGGATAGGCTCTCTTCTCTTCGCCATACCAGCAAAAAATATTCTGAGGATGAAATGAACAAAGCACTTGAGGTCAGACTTGAGCATAACCTTGAGAGGTTTGCATTAATATCTGAAGCTGCAAATACAGAGAGACCATCTGCTGTCACAAATAGTCTATTTGTTGGTGGAGCACTGGCTGCAAGATCTGTACACACACTGCAAGACTTGGGAATCACACATATTTTGTGTTTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCTGAGCTATTTTCATACAAAAACTACTCTGTGAGTGACGATGAGGATTCTAACATCAGCAGCATATTTGTCGAAGCTTGTGATTTTATAGATTGTGTTGAGCAGACAGGACAGAGGGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGTCACTTTGGTCCTTGCTTACTTGATGCTCAGGAAGAAATTCACTTTATTAGAAGCATGGAATGCTCTGATACAAGTTCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGATCTTACAGCAACTGGATCTGAAACTGCACGGGAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAAAGATGAAAACTTGCCCTAACTGTGGCAAAAATGTTGGGCTAAGCAGCAGGTCGCTTAAGCTCCATCTTCAGAAATCACATAAAGAGCTACCATAA 870 0.4115 MLHVDNKSIVIIACKFPSRGESTWDEKIDQIHDKTEISLWERIGKAEILDIESGSFSWDRLSSLRHTSKKYSEDEMNKALEVRLEHNLERFALISEAANTERPSAVTNSLFVGGALAARSVHTLQDLGITHILCLCTNEIGQSDSQFPELFSYKNYSVSDDEDSNISSIFVEACDFIDCVEQTGQRVLVHCFEGRSRSVTLVLAYLMLRKKFTLLEAWNALIQVHRRAQPNDGFAKILQQLDLKLHGKVSMEWQQRKPKMKTCPNCGKNVGLSSRSLKLHLQKSHKELP* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01223 289 FunFam Dual specificity protein phosphatase PHS1 75 248 - -
Rops10g01223 289 Pfam Dual specificity phosphatase, catalytic domain 112 240 IPR000340 GO:0008138|GO:0016311
Rops10g01223 289 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 247 IPR029021 -
Rops10g01223 289 Gene3D Protein tyrosine phosphatase superfamily 84 257 IPR029021 -
Rops10g01223 289 SMART dsp_5 102 244 IPR020422 GO:0006470|GO:0008138
Rops10g01223 289 SUPERFAMILY Protein kinase-like (PK-like) 19 87 IPR011009 -
Rops10g01223 289 ProSiteProfiles Dual specificity protein phosphatase domain profile. 102 247 IPR020422 GO:0006470|GO:0008138
Rops10g01223 289 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 29 82 IPR035010 GO:0004721|GO:0009737|GO:0043622
Rops10g01223 289 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 221 IPR000387 GO:0016311|GO:0016791
Rops10g01223 289 CDD DSP 103 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01223 Rops-Chr10 24753283 24758877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01223 80 288 Protein tyrosine phosphatase (PTP) family AT5G23720 72.727 8.96e-100 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01223 K14165 K17614 ahf:112770730 359.762