Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01218 ATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCCTGAGGCTCCTGAAGATGCTCGTAATGAAAATGTATTAGTATTTGAAACAAGCAAGGTTCTAAGTGGGACTCAGAGACTTTACTCTGTTTACTCTAAACCGGGTAGTAAAGGACTCAACCAAGATGCTGCCATTCTTTATCAGAGTTATGGGACGAAAGACACAGCATTTTGTGGCGTTTTTGATGGGCATGGAAGGAATGGTCGCATAGTGAGCAAAATAGTAAACAGCCGTTTGTGTTCACTCATATTGAACCAAAAGGATGCTCGTGCAAAGATTGATACAATAGAAAAGGATTATGATGAGAACATCCTAAACCATGTCAACACAGTGGAAGACGGTTCGGCTCCAAACAAGAATGTTCAAGAATGGAAAGAAGCTATTGTTAGTGCTTTCAGGGTGATGGACAAGGACGTGGAGCTACAAGAGAATCTAGACTGCTCTTGCAGTGGAACTACAGCTGTAGTTGTCATAAAACAGGGAGAAGATCTTGTAGTAGCTAACCTTGGTGACTCAAGAGCAGTGTTGGGGACAATCTCTGACAATGAAATCATACCAATTCAATTGACCACGGATATGAAGCCTGGATTACCTCGCGAAGCGGATCGAATAAGAAGTTGCAATGGTCGCGTACTTGCGTTAGCGGGAGAACCACATATCCAGCGAGTGTGGTTACCCAATGAGAATTCTCCAGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTCATGCTCAAAGATCACGGTATAATTGCCATCCCAGATATCTCGTATCGCACTCTTACATCAAGTGACCAATTTATTGTACTTGCAAGTGATGGGGTGTGGGATGTACTAAGCAACAACGAGGTCTCCTCAATTGTGTGGACAGCAGACACTGAGGAGGAAGCAGCAAGGGCAGTAGTGGAAGCAGCCACTGTAGCATGGAAAAACAAGTATCCCTCTTCCAAGGTAGATGACTGTACCGTGGTTTGCCTCTTCTTGCAGAAGAAACCACATAATCTTGTACATTTCAGAAAATAG 1056 0.4375 MGICISSESSAIPEAPEDARNENVLVFETSKVLSGTQRLYSVYSKPGSKGLNQDAAILYQSYGTKDTAFCGVFDGHGRNGRIVSKIVNSRLCSLILNQKDARAKIDTIEKDYDENILNHVNTVEDGSAPNKNVQEWKEAIVSAFRVMDKDVELQENLDCSCSGTTAVVVIKQGEDLVVANLGDSRAVLGTISDNEIIPIQLTTDMKPGLPREADRIRSCNGRVLALAGEPHIQRVWLPNENSPGLAMSRAFGDFMLKDHGIIAIPDISYRTLTSSDQFIVLASDGVWDVLSNNEVSSIVWTADTEEEAARAVVEAATVAWKNKYPSSKVDDCTVVCLFLQKKPHNLVHFRK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01218 351 SMART PP2C_4 29 337 IPR001932 -
Rops10g01218 351 Gene3D - 24 342 IPR036457 -
Rops10g01218 351 Pfam Protein phosphatase 2C 64 316 IPR001932 -
Rops10g01218 351 SUPERFAMILY PP2C-like 32 340 IPR036457 -
Rops10g01218 351 ProSiteProfiles PPM-type phosphatase domain profile. 39 339 IPR001932 -
Rops10g01218 351 PANTHER PROTEIN PHOSPHATASE 40 337 IPR015655 GO:0004722|GO:0006470
Rops10g01218 351 CDD PP2Cc 38 339 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01218 Rops-Chr10 24712852 24714437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01218 1 342 PP2C-type Phosphatase Gene Family AT5G26010 51.003 2.81e-105 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01218 - - gmx:100795893 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01218 10 24712852 24714437 Rops10g01218 10 24712852 24714437 ECH
Rops9g02082 9 38188750 38202920 Rops10g01218 10 24712852 24714437 PCT