Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01205 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTTAAGAGAGGACCATGGTCTCCAGAAGAAGACGCAACCCTCAAAAGTTATGTAGAGACTCATGGCACTGGGGGTAATTGGATTGCATTGCCCAGAAAAGCTGGCCTTAAGCGGTGTGGTAAGAGTTGCCGTCTTCGGTGGCTCAATTATCTTAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAGGAAGACAACATAATTTGCACCTTCTATGGTCAGATAGGAAGCAAATGGTCTACCATAGCCTCTCAGCTTCCTGGTAGGACAGACAATGATGTGAAAAACTACTGGAACACCAAACTAAAGAAGAAGCTAATGGCTGGAAAAGTTGGCTTTAAAACAGTAACCAGCAATGACACTCTTGCTTCAACCCTTTTGCTAACCCAAACCCAAAATGAAGAAACTCAAATTTTTAATTTCACTGCTTCACAAAATCCCTCTGCGCTGCCAAATTTGGATACTGACCCTAGTTCCGAGTTTAACATAAACCAGAAAAGCATGAGATTTGACCTGATTCATCAGGGTTACAGTCCATGGGACATGGATGCCGTATCAAAGTTTGGTGCAAATTCAATGAACAATTCCATGGTGTCCTTGTCTCAAGAAGGTTCAAGCATTTCAGATTTGACTTTTGCAGTGGACAACGTTAACAAGAGTGTATCGCTGGCAGAACATGCAGACAAAGAAGCAGTGGATGTCTTAATGGATTTTGACTTTGGATTTCCTTATGAGATAGTTAGTGAGTTTGTGCCTAGTTGCTATCCTGAGTTGGTTGATTTTAGCCACGCACATGGACTGAATCAAAATGTTGTTTAG 852 0.4214 MGRAPCCDKANVKRGPWSPEEDATLKSYVETHGTGGNWIALPRKAGLKRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTFYGQIGSKWSTIASQLPGRTDNDVKNYWNTKLKKKLMAGKVGFKTVTSNDTLASTLLLTQTQNEETQIFNFTASQNPSALPNLDTDPSSEFNINQKSMRFDLIHQGYSPWDMDAVSKFGANSMNNSMVSLSQEGSSISDLTFAVDNVNKSVSLAEHADKEAVDVLMDFDFGFPYEIVSEFVPSCYPELVDFSHAHGLNQNVV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01205 283 SMART sant 13 64 IPR001005 -
Rops10g01205 283 SMART sant 67 115 IPR001005 -
Rops10g01205 283 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops10g01205 283 PANTHER OS09G0431300 PROTEIN 1 216 - -
Rops10g01205 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops10g01205 283 FunFam Transcription factor RAX3 7 68 - -
Rops10g01205 283 CDD SANT 71 113 IPR001005 -
Rops10g01205 283 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops10g01205 283 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops10g01205 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops10g01205 283 CDD SANT 16 62 IPR001005 -
Rops10g01205 283 Gene3D - 7 68 - -
Rops10g01205 283 Gene3D - 70 148 - -
Rops10g01205 283 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops10g01205 283 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01205 Rops-Chr10 24560394 24561687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01205 1 118 MYB Transcription Factor Family AT3G49690 83.051 1.00e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g01205 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01205 K09422 - gmx:100817747 349.362