Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01204 ATGATCCAAATCCCAAACCTTCAAATTTCTGATTGGGACACGGATGGAGGAGTTGACACCCCCAACAGTCTCCACCGTTATGAGACATTCGGTGAAGACATTGAAGTTCCCATTCACCTTTTCTCCTCGGATCAATTTCGAATGTTCGAGTTTAAGGTTAGGTACTGCCAGCGTGGCAGGTCACATGACTGGACGGAGTGTCCATATGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAAATACCATTACTCCGGCACCCCTTGCCCTGAGTTTCGTAAAGGTTACTGCAACAAAGGTGATTCCTGCAAGTTCGCTCATGGCGTGTTCGAATGCTGGCTCCACCCTTCTCGTTATAGGACACAGCTTTGCAAGGACGGAACCTCCTGCCGCCGGCGAGTGTGCTTCTTTGCTCACACCACCGACCAACTCCGTTTCCCCTCTCATACCTCACCGGAATCGTTCCTTTCATCGTCCCCTACTTCAGTTCTTAAATCTTCTTCGCTCTCCGATTCGCCTACCGGAAACGGCGTCGTACCGTTCAGCGTGGGTCAAATAGTGGGGTCCATGCGTAATGTTAAACTTGAGGACGGGCCTTCGGGTTCGGGTCGAGTTTTTGGGTCGCCGCGAGGTGGGTTTTTGAGTCCTAGCACTACTACTACCCTGTTTGGTTGCAAAGAAGAGCCTGTTATGGAGAGGGTGGAATCGGGAAGGGACCTTAGAGCGAAAATCTACGCCAGGCTGAGTAAGGAGAATTTCGACAATGCGGCCCCTATCCCTGATATTGGATGGGTCTCGGAATTGGTGAAGTGA 819 0.5214 MIQIPNLQISDWDTDGGVDTPNSLHRYETFGEDIEVPIHLFSSDQFRMFEFKVRYCQRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTPCPEFRKGYCNKGDSCKFAHGVFECWLHPSRYRTQLCKDGTSCRRRVCFFAHTTDQLRFPSHTSPESFLSSSPTSVLKSSSLSDSPTGNGVVPFSVGQIVGSMRNVKLEDGPSGSGRVFGSPRGGFLSPSTTTTLFGCKEEPVMERVESGRDLRAKIYARLSKENFDNAAPIPDIGWVSELVK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01204 272 PANTHER UNKEMPT FAMILY MEMBER 38 272 IPR045234 -
Rops10g01204 272 ProSiteProfiles Zinc finger C3H1-type profile. 86 112 IPR000571 GO:0046872
Rops10g01204 272 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 110 IPR000571 GO:0046872
Rops10g01204 272 FunFam Zinc finger CCCH domain-containing protein 66 43 111 - -
Rops10g01204 272 SMART c3hfinal6 120 143 IPR000571 GO:0046872
Rops10g01204 272 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Rops10g01204 272 SUPERFAMILY CCCH zinc finger 84 114 IPR036855 GO:0046872
Rops10g01204 272 Gene3D - 86 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01204 Rops-Chr10 24530383 24531661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01204 40 184 C2H2 Transcription Factor Family AT5G12850 52.695 1.13e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops10g01204 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01204 - K23048 gmx:100786368 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01204 10 24530383 24531661 Rops10g01204 10 24530383 24531661 ECH