Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g01204 | ATGATCCAAATCCCAAACCTTCAAATTTCTGATTGGGACACGGATGGAGGAGTTGACACCCCCAACAGTCTCCACCGTTATGAGACATTCGGTGAAGACATTGAAGTTCCCATTCACCTTTTCTCCTCGGATCAATTTCGAATGTTCGAGTTTAAGGTTAGGTACTGCCAGCGTGGCAGGTCACATGACTGGACGGAGTGTCCATATGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAAATACCATTACTCCGGCACCCCTTGCCCTGAGTTTCGTAAAGGTTACTGCAACAAAGGTGATTCCTGCAAGTTCGCTCATGGCGTGTTCGAATGCTGGCTCCACCCTTCTCGTTATAGGACACAGCTTTGCAAGGACGGAACCTCCTGCCGCCGGCGAGTGTGCTTCTTTGCTCACACCACCGACCAACTCCGTTTCCCCTCTCATACCTCACCGGAATCGTTCCTTTCATCGTCCCCTACTTCAGTTCTTAAATCTTCTTCGCTCTCCGATTCGCCTACCGGAAACGGCGTCGTACCGTTCAGCGTGGGTCAAATAGTGGGGTCCATGCGTAATGTTAAACTTGAGGACGGGCCTTCGGGTTCGGGTCGAGTTTTTGGGTCGCCGCGAGGTGGGTTTTTGAGTCCTAGCACTACTACTACCCTGTTTGGTTGCAAAGAAGAGCCTGTTATGGAGAGGGTGGAATCGGGAAGGGACCTTAGAGCGAAAATCTACGCCAGGCTGAGTAAGGAGAATTTCGACAATGCGGCCCCTATCCCTGATATTGGATGGGTCTCGGAATTGGTGAAGTGA | 819 | 0.5214 | MIQIPNLQISDWDTDGGVDTPNSLHRYETFGEDIEVPIHLFSSDQFRMFEFKVRYCQRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTPCPEFRKGYCNKGDSCKFAHGVFECWLHPSRYRTQLCKDGTSCRRRVCFFAHTTDQLRFPSHTSPESFLSSSPTSVLKSSSLSDSPTGNGVVPFSVGQIVGSMRNVKLEDGPSGSGRVFGSPRGGFLSPSTTTTLFGCKEEPVMERVESGRDLRAKIYARLSKENFDNAAPIPDIGWVSELVK* | 273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g01204 | 272 | PANTHER | UNKEMPT FAMILY MEMBER | 38 | 272 | IPR045234 | - | |
Rops10g01204 | 272 | ProSiteProfiles | Zinc finger C3H1-type profile. | 86 | 112 | IPR000571 | GO:0046872 | |
Rops10g01204 | 272 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 89 | 110 | IPR000571 | GO:0046872 | |
Rops10g01204 | 272 | FunFam | Zinc finger CCCH domain-containing protein 66 | 43 | 111 | - | - | |
Rops10g01204 | 272 | SMART | c3hfinal6 | 120 | 143 | IPR000571 | GO:0046872 | |
Rops10g01204 | 272 | SMART | c3hfinal6 | 85 | 111 | IPR000571 | GO:0046872 | |
Rops10g01204 | 272 | SUPERFAMILY | CCCH zinc finger | 84 | 114 | IPR036855 | GO:0046872 | |
Rops10g01204 | 272 | Gene3D | - | 86 | 148 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g01204 | Rops-Chr10 | 24530383 | 24531661 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g01204 | 40 | 184 | C2H2 Transcription Factor Family | AT5G12850 | 52.695 | 1.13e-57 | 194 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Rops10g01204 | zf-CCCH | 4.2e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g01204 | - | K23048 | gmx:100786368 | 328.176 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops10g01204 | 10 | 24530383 | 24531661 | Rops10g01204 | 10 | 24530383 | 24531661 | ECH |