Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01201 ATGGAAGAATACACTACAAATCACTTGAATGAAAACACAAGTCCAAGTTCAAGGGCAAATTGGTTGTACTCCTCAGCTGGTGGTTCAAACTTGGGAAACCGCCATCATCATCAGTTTCCCCTCAACAACTTCCATCTTCAATCTGGTGGATCCTCAGATCACTGCTTTCAATCCGATCAAGTACCACACCCTTCTGTGAAAACTGAGTCCAACAACTCGCACCTCCACTCTCCAATTTTCCACTACCCTTTAATGAGAGGAAATCTTCTCCTCACGCTGTATCCTCAGCAAGGAGCAAGCCAGAGCTCTAACGAACTTGAAGCCATGAAAGCCAAAATCATTTCTCATCCTCAATACTCCAATCTTTTAGAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGTGGCACGTTTGGCTGAGGCTCGACGGGATTTTGAGGCACGGCAGCGATCTTGTGTTAGTTCAAGGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCTTACGGTGACATACTTGTGAAGTACCGTGACGAATTAACAAGGCCTGTACAAGAGGCGATGGATTTCATGCGGAGGATAGAAACTCAGCTCAACATGCTTTGCAATGGACCCGTTCGGATCTTCTCTGATGATAAATGTGAAGGCATTGGTTCATCGGAAGAGGATCAAGTCAACAGTGGTGGAGAAACAGAACCGCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTCAAAAACCACTTGCTCAGGAAGTATAGTGGTTACTTAGGTAGCCTAAAGCAAGAACTTTCAAAGAAAAAGAAAAAAGGAAAACTTCCTAAAGATGCTAGACAAAAGCTACTCAGCTGGTGGGAATCACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAAGCAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGCGGCATTGGAAACCATCTGAAGACATGCAATTCATGGTGATGGATGGCCTGCATCCGCAGAACGCAGCTCTCTACATGGATGGCCACTACATGGCTGATGGCCGTTACCGATTTGGGCCATAA 1107 0.4553 MEEYTTNHLNENTSPSSRANWLYSSAGGSNLGNRHHHQFPLNNFHLQSGGSSDHCFQSDQVPHPSVKTESNNSHLHSPIFHYPLMRGNLLLTLYPQQGASQSSNELEAMKAKIISHPQYSNLLEVYMDCQKVGAPPEVVARLAEARRDFEARQRSCVSSRETCKDPELDQFMEAYGDILVKYRDELTRPVQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGIGSSEEDQVNSGGETEPPEIDPRAEDRELKNHLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLSWWESHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAALYMDGHYMADGRYRFGP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01201 368 Pfam ELK domain 250 271 IPR005539 GO:0003677
Rops10g01201 368 SUPERFAMILY Homeodomain-like 271 345 IPR009057 -
Rops10g01201 368 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
Rops10g01201 368 SMART ELK_2 250 271 IPR005539 GO:0003677
Rops10g01201 368 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Rops10g01201 368 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Rops10g01201 368 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Rops10g01201 368 MobiDBLite consensus disorder prediction 224 247 - -
Rops10g01201 368 MobiDBLite consensus disorder prediction 52 72 - -
Rops10g01201 368 FunFam Homeobox protein knotted-1-like 2 275 337 - -
Rops10g01201 368 SMART KNOX2_2 158 209 IPR005541 GO:0003677|GO:0005634
Rops10g01201 368 Pfam KNOX1 domain 108 149 IPR005540 GO:0003677|GO:0005634
Rops10g01201 368 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Rops10g01201 368 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 340 - -
Rops10g01201 368 Pfam KNOX2 domain 162 208 IPR005541 GO:0003677|GO:0005634
Rops10g01201 368 SMART HOX_1 272 337 IPR001356 GO:0003677
Rops10g01201 368 Gene3D - 267 340 - -
Rops10g01201 368 CDD homeodomain 282 334 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01201 Rops-Chr10 24471166 24477146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01201 51 368 Homeobox Transcription Factor Family AT4G08150 67.378 1.70e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops10g01201 KNOX2 5.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01201 - - aprc:113866252 602.823