Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01200 ATGGGTTTTGATATCTCTAACCCGGGGCTTCGACTTGGTCTTGGTCTTGGCCTCCGTGACCAGTGGTCAGAAAATTGCATGAAGATCGATGAACACAAGCAAAAGAAAAAGGATGAGGATCCATGTGATAAGGCATACCCATCTCTTGCATTAGGACCAACTCATGTTGTTGATGCAAATAAACAACTAGTTACAAAGGCTGAATCGGATGAATATTTTCATCCACATGTCTCTTCTCCAAGCGCAGCGTCTTCATTTTCTAACTCTTCTAGCATCAAGAAGGAGAGAGATCAGTTTGCAGGTGAAGAACTTGAGCTTGAGGTAGAGAAGATTCCATCAAGGGTTGTGGATGTTGATGAAAATGGTAACCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCCGCAGTCTTAGAGGATAGCTTCAAAGAGCACTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCTAGGAAGTTGAATCTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAACTGAAACAAACAGAAGTGGACTGTGAGTTACTGAAGAAGTGCTGTGAAACTCTAACAGAGGAGAACAAGAGGCTTCAAAAGGAACTGCAAGAGCTTAAATCGATGAAAACAACATCTGGACCCTTTTATATGCAGCTTCCAGTGGCCAGCCTCACCGTTTGTCCTTCTTGTAAGAGAATTTGCGGTGGCGGTGGGAGCAACAATGGCTCCTCACCCTCCACGGCTTTGTTTATTGGCCCCAATGCCCATCATCACTTCTCTACATTCACTCAATCATCTGCAGCTTGCTAG 828 0.4505 MGFDISNPGLRLGLGLGLRDQWSENCMKIDEHKQKKKDEDPCDKAYPSLALGPTHVVDANKQLVTKAESDEYFHPHVSSPSAASSFSNSSSIKKERDQFAGEELELEVEKIPSRVVDVDENGNPRKKLRLTKEQSAVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELKSMKTTSGPFYMQLPVASLTVCPSCKRICGGGGSNNGSSPSTALFIGPNAHHHFSTFTQSSAAC* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01200 275 CDD homeodomain 124 182 IPR001356 GO:0003677
Rops10g01200 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 252 - -
Rops10g01200 275 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Rops10g01200 275 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Rops10g01200 275 FunFam Homeobox-leucine zipper protein 18 113 186 - -
Rops10g01200 275 SMART halz 181 225 IPR003106 GO:0006355|GO:0043565
Rops10g01200 275 Gene3D - 118 186 - -
Rops10g01200 275 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Rops10g01200 275 Coils Coil 187 217 - -
Rops10g01200 275 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Rops10g01200 275 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Rops10g01200 275 SMART HOX_1 123 185 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01200 Rops-Chr10 24444797 24446061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01200 92 275 Homeobox Transcription Factor Family AT4G37790 58.462 9.33e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops10g01200 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01200 K09338 - gmx:100790927 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01200 10 24444797 24446061 Rops10g01200 10 24444797 24446061 ECH