Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01198 ATGGGAAGGGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCACCTGAAGAGGATGCCAAGCTAAAATCCTACATCGAACAACACGGAACCGGTGGAAACTGGATCGCTTTGCCACAAAAGATTGGTCTTAAGCGATGTGGCAAGAGTTGCCGTCTAAGGTGGCTAAACTATCTTCGCCCTAATATCAAACACGGGGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGGTGGTCGGTTATTGCAGCACAATTACCAGGAAGAACTGATAATGATATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGAAAGCACCGTAAAGAACAACAAGCACGTAATAAAGGTAAAAGCAACGGTTTTCTTAAGCAGGAAATCAATGGAGGGAGTGGGGATTCTTCATCTTTGGTTCCAGAAAATAGTACTCAACAGTCATATTGGCCAAATATTCCTGTGCTGCCACCGTTGCCATACACAAACCCAGGTCCTAGTTTCAATGATCAAGATTCTATTAGGAAATTGCTAATCAAACTTGGAGGAAGATTCTCTGATGATTATCAACCCATCCTTGATGGGTTGAATCTTCAATTCCCAGATGGTCTTCCCTCGACACAACAAATTCATGAAGAACAAGTCCATATTGGATCTTCTGGCTGCATCAACACCTCTCAGACTAATGATAATCATAATCAGTACTGTGCTGAAGGGGTAGCTGGGCTTGACTTGGTGCAAGGACAAGGTAGTTTCACTGCAGCGATAGGAGAAATGACATCTACTCATCATGATTATCCACAAAGATTAGGTGGGCTGGAGTTCTTCTATGGGGAGGACATGATCACTGATAGGATAATGGGAACTCCTGTTTGTAGCCAAAGTACTACTAGTTGGGGTGAGACTGCCACTTTGATTTATCCTCCTCTTGTTGCTTCGGATTACCAGGGTGTGCGGCAAGAGACACCACAAGAGTGTGCATTTCAAGAGTTGAGCTACCCCGGGGCGCAATAG 1050 0.44 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARNKGKSNGFLKQEINGGSGDSSSLVPENSTQQSYWPNIPVLPPLPYTNPGPSFNDQDSIRKLLIKLGGRFSDDYQPILDGLNLQFPDGLPSTQQIHEEQVHIGSSGCINTSQTNDNHNQYCAEGVAGLDLVQGQGSFTAAIGEMTSTHHDYPQRLGGLEFFYGEDMITDRIMGTPVCSQSTTSWGETATLIYPPLVASDYQGVRQETPQECAFQELSYPGAQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01198 349 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops10g01198 349 MobiDBLite consensus disorder prediction 119 158 - -
Rops10g01198 349 CDD SANT 71 113 IPR001005 -
Rops10g01198 349 Gene3D - 70 139 - -
Rops10g01198 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops10g01198 349 FunFam Transcription factor RAX3 70 146 - -
Rops10g01198 349 PANTHER OS09G0431300 PROTEIN 1 143 - -
Rops10g01198 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops10g01198 349 FunFam Transcription factor RAX3 7 68 - -
Rops10g01198 349 SMART sant 13 64 IPR001005 -
Rops10g01198 349 SMART sant 67 115 IPR001005 -
Rops10g01198 349 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops10g01198 349 Gene3D - 7 68 - -
Rops10g01198 349 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops10g01198 349 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops10g01198 349 CDD SANT 16 62 IPR001005 -
Rops10g01198 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops10g01198 349 MobiDBLite consensus disorder prediction 130 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01198 Rops-Chr10 24404359 24405961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01198 1 199 MYB Transcription Factor Family AT3G49690 64.706 2.84e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g01198 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01198 K09422 - gmx:778079 509.22