Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01196 ATGGACCTTGCTGGTCTTTTAACTTCTGCTGGAATTAATATTGCTGTGTGTGTGGTGCTCTTTACACTCTATTCAGTATTAAGGAAACAACCCAGCAATGTTAAAGTGTACTTTGGAAGAAGGCTAGTCTCTCGGCGTTCAAGGAGCCATGACCTTTGCTTGGAAAGATTCGTTCCCTCTCCTACATGGGTAATGAAAGCATGGGAAACAACTCAAGATGAAATACTGAGTATTGGCGGCTTGGATGCTGTGGTCTTTTGCAGGATGCTTGTGTTCAGTATTCGAGTGTTTTCTGTTGCTGCTGTCATCTGCGTTTTACTAGTGCTTCCAGTGAATTACTATAGTCAGAACAGAATACGTAAGAATATACCTTTTGAGTCACTGGAAGTATTTACCATTGAGAATGTCCAGGAAGGATCCAGCTGGCTTTGGGCTCATTGTCTCGCATTATACATCATAACTTTGACAGCTTGTTTTCTTCTTTTCTTGGAATTTAGGAGCATAATTAATTTGCGGCTATTACATATTATTGAGTCGCCACCAAATCCAAGTCATTTTGCAATTCTTGTCCGAGAAATACCCCGGTCTTCAGAAGAATCTTACTGCGACACAGTGAAAAAGTTTTTCTCACATTACCATGCATCATCCTATTTGTCACACCAAATAGTGTACAAGTCCGGTGCAGTTCAGAAACTGAAGCTTCTTCAATTGAGCAGAAGGGAAAAACTTAGTCGCGGAAAAGGCGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACTTTGAAGTTATTCCCAGGGAAGAAACCTCTAATCCTTGCTCCAAAAACTACACTTTATACTTGGTATAAAGAATTTATCAAGTGGCAGATTTATGTGCCAGTGTATTTGATTCATGGTCGAAGAACCCAGAGAGATTTCAACAAAAAACCATTGGCTCTTCGTGGAGTTCCAAATCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTAGACAAGATACAAAAGTGGCATACATACCCTAGTGTTCTGGTTATGGGCTATACTTCATTTTTATCACTAAGGCGAGAGGATTCAAAGTTTGAAGGGCACAATCCTAGAAACACTAAATCAAAGTTGAGGAAAAGCTTAATGAAAGTAGAGACAGAACTGAGAATATTACTTTCGGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACACTTTGCTTGGCAAGACCAAGGTTTGTTCATGAAGTGCTGAATGAATTAGATCCAAAATATGGGAGGAACAGTAAAATATCCATTTACAAGAGTCACGGGCTAGGAAATTCTTCTTAG 1326 0.3982 MDLAGLLTSAGINIAVCVVLFTLYSVLRKQPSNVKVYFGRRLVSRRSRSHDLCLERFVPSPTWVMKAWETTQDEILSIGGLDAVVFCRMLVFSIRVFSVAAVICVLLVLPVNYYSQNRIRKNIPFESLEVFTIENVQEGSSWLWAHCLALYIITLTACFLLFLEFRSIINLRLLHIIESPPNPSHFAILVREIPRSSEESYCDTVKKFFSHYHASSYLSHQIVYKSGAVQKLKLLQLSRREKLSRGKGGCVISHAPGAGKTLKLFPGKKPLILAPKTTLYTWYKEFIKWQIYVPVYLIHGRRTQRDFNKKPLALRGVPNPTGDVKHVLDCLDKIQKWHTYPSVLVMGYTSFLSLRREDSKFEGHNPRNTKSKLRKSLMKVETELRILLSGTLFQNNFCEYFNTLCLARPRFVHEVLNELDPKYGRNSKISIYKSHGLGNSS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01196 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 413 IPR027417 -
Rops10g01196 441 Gene3D - 212 431 IPR038718 -
Rops10g01196 441 Pfam SNF2-related domain 247 414 IPR000330 GO:0005524|GO:0140658
Rops10g01196 441 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 5 244 IPR045122 GO:0005227
Rops10g01196 441 Pfam Late exocytosis, associated with Golgi transport 6 162 IPR032880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01196 Rops-Chr10 24381831 24385741 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops10g01196 SNF2_N 1.8e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01196 K21989 - gmx:100796574 386.726