Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g01189 | ATGGGAGGTCTTGAAAATGTCATGGGGCTTCAACAGGGAAACGAGGGGGGTTTGAGTACAAGTGCTTCAGAAATGACATTTTGTTCTGTGTCTATGGCTATGCCTTCAGGTGTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGAATCCACTTGTTTCATTGAGTGAGATGCAAACTTTTGGAGGCTCTCCAATGGTTTCTCATTGCGAGTTTGCAAATTCATCTTACCCTCTTGTTTTGAAAAATCAGGGAATGAGTAGCAACTCTCACCTTGTTCAACATATGGAAATGGTCCCCAAGGTTCCTTGCTTTGGAAATGGGAGCTTCTCAGAAGTGGTTGGCTCCTTCAGCCAACCTGGGTCTGGTGATATAGCTAACACAGGATATCAACCAAATTGTTATCCAAGCAATGAAGCGGGAATTGAAAGAGGTCCAATAAATAATGATCAATCTCGGGGTGAAGGTTCAACTCATGAAGAGGGAGAAACGGGATTTGCACCTAGTGAAAATAGAAGAAAGCGAGGACCTGAATGTGATTCTATTCTCAATCCAAATAAGAATGCCGAGGAGGATGCAATTAAAGATTCTCCTGATGGTGTGAAAGAACAATATGAAAAGAAACCAAAAGTTGAACAAAATAGCAGTGTAAGTTTGCATGATAAGCAATCGACCAAGGATAAGAAAGACGACTCTAACAGTGGAGATGCTCCCAAACAAAATTTCATTCATGTGAGAGCCAGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATCAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGTGACAAGATAATAGGTAAAGCTGTAATGCTTGATGAAATTATAAACTACGTACAATCACTGCAACAGCAAGTTGAGTTTTTGTCCATGAAACTTGCCATTGTAAACCCAGAACTGAATTTTGATGCAGAGCGGATCCTCTCCAAAGATATTCTCCAGTCACGCATTGGACATGGACCTGTTGGTGGATATGGTCCTGGTATCAGCTGCTCTGATCCATTCCCCTCTGGAAGTGTCCATGGAACACTAGCTGGCATGCCCAGCACATCAACACAATTCCCTCCATTGTCACAGTCTGTTCTTGGCCACGAGTTCCAAAGCTTCTATGGAATGGACTATGATTCCAGTACAGCCACAGACAATCTGGGACCCGATGGATGGTTGAAAACAAAGTTATAG | 1236 | 0.4288 | MGGLENVMGLQQGNEGGLSTSASEMTFCSVSMAMPSGVANPFLASSAWNPLVSLSEMQTFGGSPMVSHCEFANSSYPLVLKNQGMSSNSHLVQHMEMVPKVPCFGNGSFSEVVGSFSQPGSGDIANTGYQPNCYPSNEAGIERGPINNDQSRGEGSTHEEGETGFAPSENRRKRGPECDSILNPNKNAEEDAIKDSPDGVKEQYEKKPKVEQNSSVSLHDKQSTKDKKDDSNSGDAPKQNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKIIGKAVMLDEIINYVQSLQQQVEFLSMKLAIVNPELNFDAERILSKDILQSRIGHGPVGGYGPGISCSDPFPSGSVHGTLAGMPSTSTQFPPLSQSVLGHEFQSFYGMDYDSSTATDNLGPDGWLKTKL* | 412 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g01189 | 411 | SMART | finulus | 256 | 306 | IPR011598 | GO:0046983 | |
Rops10g01189 | 411 | CDD | bHLH_AtBPE_like | 240 | 325 | - | - | |
Rops10g01189 | 411 | MobiDBLite | consensus disorder prediction | 124 | 261 | - | - | |
Rops10g01189 | 411 | MobiDBLite | consensus disorder prediction | 188 | 234 | - | - | |
Rops10g01189 | 411 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 153 | 361 | IPR024097 | GO:0006355 | |
Rops10g01189 | 411 | FunFam | Basic helix-loop-helix transcription factor | 247 | 319 | - | - | |
Rops10g01189 | 411 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 250 | 300 | IPR011598 | GO:0046983 | |
Rops10g01189 | 411 | Pfam | Helix-loop-helix DNA-binding domain | 253 | 301 | IPR011598 | GO:0046983 | |
Rops10g01189 | 411 | Gene3D | - | 247 | 319 | IPR036638 | GO:0046983 | |
Rops10g01189 | 411 | MobiDBLite | consensus disorder prediction | 153 | 179 | - | - | |
Rops10g01189 | 411 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 248 | 318 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g01189 | Rops-Chr10 | 24254648 | 24258322 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g01189 | 1 | 411 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G10120 | 39.480 | 8.15e-69 | 220 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Rops10g01189 | HLH | 5.6e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g01189 | - | - | gmx:100801930 | 500.36 |