Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01189 ATGGGAGGTCTTGAAAATGTCATGGGGCTTCAACAGGGAAACGAGGGGGGTTTGAGTACAAGTGCTTCAGAAATGACATTTTGTTCTGTGTCTATGGCTATGCCTTCAGGTGTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGAATCCACTTGTTTCATTGAGTGAGATGCAAACTTTTGGAGGCTCTCCAATGGTTTCTCATTGCGAGTTTGCAAATTCATCTTACCCTCTTGTTTTGAAAAATCAGGGAATGAGTAGCAACTCTCACCTTGTTCAACATATGGAAATGGTCCCCAAGGTTCCTTGCTTTGGAAATGGGAGCTTCTCAGAAGTGGTTGGCTCCTTCAGCCAACCTGGGTCTGGTGATATAGCTAACACAGGATATCAACCAAATTGTTATCCAAGCAATGAAGCGGGAATTGAAAGAGGTCCAATAAATAATGATCAATCTCGGGGTGAAGGTTCAACTCATGAAGAGGGAGAAACGGGATTTGCACCTAGTGAAAATAGAAGAAAGCGAGGACCTGAATGTGATTCTATTCTCAATCCAAATAAGAATGCCGAGGAGGATGCAATTAAAGATTCTCCTGATGGTGTGAAAGAACAATATGAAAAGAAACCAAAAGTTGAACAAAATAGCAGTGTAAGTTTGCATGATAAGCAATCGACCAAGGATAAGAAAGACGACTCTAACAGTGGAGATGCTCCCAAACAAAATTTCATTCATGTGAGAGCCAGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATCAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGTGACAAGATAATAGGTAAAGCTGTAATGCTTGATGAAATTATAAACTACGTACAATCACTGCAACAGCAAGTTGAGTTTTTGTCCATGAAACTTGCCATTGTAAACCCAGAACTGAATTTTGATGCAGAGCGGATCCTCTCCAAAGATATTCTCCAGTCACGCATTGGACATGGACCTGTTGGTGGATATGGTCCTGGTATCAGCTGCTCTGATCCATTCCCCTCTGGAAGTGTCCATGGAACACTAGCTGGCATGCCCAGCACATCAACACAATTCCCTCCATTGTCACAGTCTGTTCTTGGCCACGAGTTCCAAAGCTTCTATGGAATGGACTATGATTCCAGTACAGCCACAGACAATCTGGGACCCGATGGATGGTTGAAAACAAAGTTATAG 1236 0.4288 MGGLENVMGLQQGNEGGLSTSASEMTFCSVSMAMPSGVANPFLASSAWNPLVSLSEMQTFGGSPMVSHCEFANSSYPLVLKNQGMSSNSHLVQHMEMVPKVPCFGNGSFSEVVGSFSQPGSGDIANTGYQPNCYPSNEAGIERGPINNDQSRGEGSTHEEGETGFAPSENRRKRGPECDSILNPNKNAEEDAIKDSPDGVKEQYEKKPKVEQNSSVSLHDKQSTKDKKDDSNSGDAPKQNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKIIGKAVMLDEIINYVQSLQQQVEFLSMKLAIVNPELNFDAERILSKDILQSRIGHGPVGGYGPGISCSDPFPSGSVHGTLAGMPSTSTQFPPLSQSVLGHEFQSFYGMDYDSSTATDNLGPDGWLKTKL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01189 411 SMART finulus 256 306 IPR011598 GO:0046983
Rops10g01189 411 CDD bHLH_AtBPE_like 240 325 - -
Rops10g01189 411 MobiDBLite consensus disorder prediction 124 261 - -
Rops10g01189 411 MobiDBLite consensus disorder prediction 188 234 - -
Rops10g01189 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 153 361 IPR024097 GO:0006355
Rops10g01189 411 FunFam Basic helix-loop-helix transcription factor 247 319 - -
Rops10g01189 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 300 IPR011598 GO:0046983
Rops10g01189 411 Pfam Helix-loop-helix DNA-binding domain 253 301 IPR011598 GO:0046983
Rops10g01189 411 Gene3D - 247 319 IPR036638 GO:0046983
Rops10g01189 411 MobiDBLite consensus disorder prediction 153 179 - -
Rops10g01189 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 318 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01189 Rops-Chr10 24254648 24258322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01189 1 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 39.480 8.15e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g01189 HLH 5.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01189 - - gmx:100801930 500.36