Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01187 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTTGTAGGGGGCATTTCTCGTGACACCACCGAAGATATTCTCAAAACCCACTTCACTAAGTACGGCGCCGTTTTGGATTCCACTATCTCTGTAGACCGCAGCACCCGAAGCCCTAGGGGTTTTGGTTTCGTCACGTTCTCTGATCTCTCTGCAGCTGACAAAGCCCTTCATGACACGCACGTTATTCTTGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGAACAGCAACAACAAAACCAATTACAGAATAGAGGGGGAACTAACTATAGTAGTAATGACTGTAGCAGTGACATTAGGACTAAGAAGATTTTTGTAGGTGGTTTACCTGCTGGTATATCCGAGGAGGAGTTTAAGAAATACTTTGAGAGGTTTGGAAGGATAACAGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCCAGGGGGTTTGGGTTCATCACTTTTGATTCGGAGGAATCCGTGCAAAACGTTATGGTCAAAAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCCGTTCCGAAAGAGGGGAACCCTGGTTATGATGGTTTTAATAAATTAAGATATAAGAATGAAAGAGGAGGTATGAAAAGTTTTCCTCAGTATAGTCCTAGGAACACGTTCCCTCGCTTTGCTCCTTTGCCATGGTATAGTAGTGATGGTGGATATGGATACGGATCTAACACCTATGGCTGCTGGTACCCTATGGGTGGGTATGGGGGGAATGGATATGCAGTTCCGTCTGATGCTTCTAGGAACTTCTGGTATGGGCCCATGATAACTGGTCCTCAGGCTTGTCAGGTGCCTTATGCTGGTGCCTTGCCGAGTGTTGCATATGTGGGTGGTAGGGTTGGAATAGTAGGTGGTGATGCTGGAAATTGGGGGTACAATGGCATTTTTGGGTCTGCAACAAATATGAAATTTGATCAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGACATCACATCATGGTGTAAAGCAGGATGTAGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATTTCTAGTTAA 1098 0.4463 MNLKMDSDRAKLFVGGISRDTTEDILKTHFTKYGAVLDSTISVDRSTRSPRGFGFVTFSDLSAADKALHDTHVILGRTVEVKKAIPRSEQQQQNQLQNRGGTNYSSNDCSSDIRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNPGYDGFNKLRYKNERGGMKSFPQYSPRNTFPRFAPLPWYSSDGGYGYGSNTYGCWYPMGGYGGNGYAVPSDASRNFWYGPMITGPQACQVPYAGALPSVAYVGGRVGIVGGDAGNWGYNGIFGSATNMKFDQPFNANGFVPGNVTSHHGVKQDVDSSSLKGSNGEISS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01187 365 CDD RRM2_Hrp1p 117 194 - -
Rops10g01187 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Rops10g01187 365 SUPERFAMILY RNA-binding domain, RBD 114 203 IPR035979 GO:0003676
Rops10g01187 365 Gene3D - 8 89 IPR012677 -
Rops10g01187 365 MobiDBLite consensus disorder prediction 344 365 - -
Rops10g01187 365 SMART rrm1_1 117 189 IPR000504 GO:0003723
Rops10g01187 365 SMART rrm1_1 11 82 IPR000504 GO:0003723
Rops10g01187 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Rops10g01187 365 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 291 - -
Rops10g01187 365 Gene3D - 90 206 IPR012677 -
Rops10g01187 365 FunFam RNA-binding protein 1 112 202 - -
Rops10g01187 365 MobiDBLite consensus disorder prediction 346 365 - -
Rops10g01187 365 SUPERFAMILY RNA-binding domain, RBD 6 110 IPR035979 GO:0003676
Rops10g01187 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Rops10g01187 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 184 IPR000504 GO:0003723
Rops10g01187 365 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01187 Rops-Chr10 24193128 24194761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01187 12 266 Eukaryotic Initiation Factors Gene Family AT4G34110 26.236 2.15e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01187 K14411 - gmx:100816822 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01187 10 24193128 24194761 Rops10g01187 10 24193128 24194761 ECH