Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01186 ATGGATCTTGGGGTGGTGGGTTTGGATGGGTTGGTGGGTTTAGACGCTGGATTTGTTCCTCTTGCTACAGATCCTGAATCAAAACAAAAGTGGTACGGATCCGGGTTCCTTAAGCAAGAGAGATCTGGCACCACTGAAGATGAGTGGAGGAGTTCCAAAGTGGCTAAGATTGATGACATATCTGCTTCCAAAGCAATGCTTTTCCAGCACAGAAATTCCTTACTGAGATCCAATGCTACTCTTTTTTCTGATGGTCAGAAGAACCAGCAGCAAATGCTGAGCTTCTCTTCTCCAAAATCAGAACCTTTGTTAGTGGACAAGAGCTCTTCTAATGCCACATTTCAATATTCATTCCACCCGTTATCTAGTTACAATAGAAATACAGGTTACAGTTCTGGAAGCATGCATGGGATTCTAGCGGGGACAAGAGGGCCATTCACTCCGTCTCAGTGGATGGAGCTGGAACATCAGGCCCTGATCTACAAGTACATAACAGCAAATGTACCCGTACCATCTCATCTTCTCATCCCCATCAAGAAAGCTCTTGAATCTGCTGGGTTCTGTAACTTTTCAAACGGTCTTCTGAGACCCAATGCCATGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACTGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCTAGAGATGCCGTTGTGGATCAGAAGTATTGCGAGCGGCACATGAATAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACTGGAACCACCAACAATGCAGTGGTGCCCGGAAGCACTGCATCCAACAGCCTCACATTTTCACAACAGGAACCCAAGCCTCTTGCATCTGATACTTCTGCACCTAACAACATCAACAGGATGTTTATGAATAGCAAGGAGAATGGTAGCGAGAGAACCCTGGATGCTGATGATGCCCTTCCTATGCTGCCTGCTACTCTTGAGCTGAAACAAAAGGAAAACCCCTTTATGATTCATAAACAGCAAATCCCATATGAAGAAGAATCAAGGAGGAACGAGTTTGGGGTTGTCACTTGTGATTCCCTACTTAACCCTTCGAATAAAGGCTCCACCACGTTGCTCAGCGACCCAGAAACTGATTCCCAACATTCCCTAAGGCAATTCATTGATGACTGGCCCAAAAATCAGTCTAATCGCTCATGGCCCGAGCTTGACGTGCAATCAGAGAGAACTGAACTATCAATTTCCATCCCAAAGGCAACTTCCACAGATTTCATGTCATCCACTCCCTCTCCCACCAATAATGAGAAGGTCACATTGTCACCTCTTCGGCTATCAAGGGAGTTAGACCCAATTCTAATGGGTTTGGGTGTTGGAAATGCTTTCAATGACCCAAAGACTAGGCGGGCTAATTGGATTCCAATTGCATGGGAGAGTTCTATGGGTGGTCCTCTTGGAGAGGTTCTCAATCTTAGCAATAAGAATAGCAGTGCTAAGAATCCTTCAGCTCTCAACCTCATGACTGATGGGTGGGACAATAGCCCTTCTTTAGGTTCTTCTCACACTGGGGTTTTGCAAAAGACAGCGTTTGGATCTCTTTCCAATAGCAGTGCTGGTAGCAGTCCAAGTGCTGAAAATAAAACCCAAGAAGGTGCCAGCTTCTGCAATGACCTCCTCGGTTCAACTCTTGGGAATTCTTCCTCCTTGCCTGCCTTGTAA 1731 0.4656 MDLGVVGLDGLVGLDAGFVPLATDPESKQKWYGSGFLKQERSGTTEDEWRSSKVAKIDDISASKAMLFQHRNSLLRSNATLFSDGQKNQQQMLSFSSPKSEPLLVDKSSSNATFQYSFHPLSSYNRNTGYSSGSMHGILAGTRGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFCNFSNGLLRPNAMGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTGTTNNAVVPGSTASNSLTFSQQEPKPLASDTSAPNNINRMFMNSKENGSERTLDADDALPMLPATLELKQKENPFMIHKQQIPYEEESRRNEFGVVTCDSLLNPSNKGSTTLLSDPETDSQHSLRQFIDDWPKNQSNRSWPELDVQSERTELSISIPKATSTDFMSSTPSPTNNEKVTLSPLRLSRELDPILMGLGVGNAFNDPKTRRANWIPIAWESSMGGPLGEVLNLSNKNSSAKNPSALNLMTDGWDNSPSLGSSHTGVLQKTAFGSLSNSSAGSSPSAENKTQEGASFCNDLLGSTLGNSSSLPAL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01186 576 MobiDBLite consensus disorder prediction 261 306 - -
Rops10g01186 576 MobiDBLite consensus disorder prediction 245 306 - -
Rops10g01186 576 ProSiteProfiles WRC domain profile. 214 258 IPR014977 -
Rops10g01186 576 PANTHER GROWTH-REGULATING FACTOR 5 85 427 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops10g01186 576 Pfam WRC 215 257 IPR014977 -
Rops10g01186 576 ProSiteProfiles QLQ domain profile. 145 180 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops10g01186 576 SMART QLQ_2 144 180 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops10g01186 576 MobiDBLite consensus disorder prediction 536 560 - -
Rops10g01186 576 Pfam QLQ 145 178 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01186 Rops-Chr10 24142935 24146736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01186 29 535 GRF Transcription Factor Family AT2G22840 43.431 2.28e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops10g01186 WRC 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01186 - - aprc:113865097 817.379