Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01179 ATGTGCGCAACAATGCTATCTAAAGGGAGAAGAGAAGATGAGAAGCTTCACATGGTGAATCTAGAAGCCTCCATGAAAGGTGGTGGCGTCCCTGAAAAATTGGATCTGAAGATGTTGATTAAGGAGCTGGAATCAATTGACGTGCCTTCAGTTTTTATCTGTCCAATCTCTCTGCAACCAATGCAAGACCCTGTGACCCTTTGTACAGGTCAAACATATGACAGGTCCAATATTCTGAAATGGTTCTCACTTGGTCACAATACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCAGTCACACCCAACAGGACTCTCAATCAATTCATCCTTAGCTGGTTCTCACAGAAATGCCTGGTCATGAAGAAGAAGTTCGAGGATGTGCAAGGAACAGCCTTGGAGCTCTTGAACACACTCAAGAAGGTAAAAGGTCAAGCTAGACTTAAAGCTCTTAAAGAACTTCGCATGCTTGTTGATTCTCATGCTTCCATAAGGAAGACAGTTAAAGAAAATGGTGGGTTTGCTTTGATATCTTCCTTATTGGGTCCTTTCACTTCACATGCTGTTGGGTCTGAAGCCATTGGGATCCTTGTGAATTTGGATTTAAGTTCTGAGTTGAAGAAAAATTTGATGCATCCTGCGAAGGTATCATTGTTGGTGGATATTATGAATGAGGGAACCATTCAAACAAAGATGAATTGTGCCAAATTGATTGAAATGTTGTTGATGGAAGGGAATGGTCCCGAGACACAAGTTGTCTCAAGCTTGAGTCTTTTGGTTGGATTATTAAGGTTAGTGAGAAATAAGAAACACCCAACTGGGGTTTTAACTGGACTCATATTACTCAAGATTATATGCTCTAATGAATCAGTTAGAAGCTCAGTTGTGAGCATTGGAGCTGTGCCTCAATTGATTGAGCTTTTGCCCACTTTGAATAATGAGTGCTTAGAGATAGCACTATATATTCTTGAAGTGTTGTCAACCCTTCCAGAGGGAAGATTGGCTTTGAAAGAATGTCCAAACATTATTCCCAATGTAGTGAAGTTATTGATGAGAGTCTCAGAGAGCTGCACACAATTTGCATTGTCAATCTTGTGGGCTATCTACAAGCTTGCACCGGAAGAATGTGCTCCAAAAGCTGTGGAGGCTGGGTTGGCTGCAAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCGGTGTTGAAGCAGATGTCTTCTGAGTTTTTGAAAATGTGCAGTCTTGATTACTCTACTAGTTTCTTGATTTCCAAGTGTATGCTTACTACAACAATACAATGA 1302 0.4109 MCATMLSKGRREDEKLHMVNLEASMKGGGVPEKLDLKMLIKELESIDVPSVFICPISLQPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNRTLNQFILSWFSQKCLVMKKKFEDVQGTALELLNTLKKVKGQARLKALKELRMLVDSHASIRKTVKENGGFALISSLLGPFTSHAVGSEAIGILVNLDLSSELKKNLMHPAKVSLLVDIMNEGTIQTKMNCAKLIEMLLMEGNGPETQVVSSLSLLVGLLRLVRNKKHPTGVLTGLILLKIICSNESVRSSVVSIGAVPQLIELLPTLNNECLEIALYILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECAPKAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLDYSTSFLISKCMLTTTIQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01179 433 SMART Ubox_2 51 114 IPR003613 GO:0004842|GO:0016567
Rops10g01179 433 Pfam U-box domain 48 118 IPR003613 GO:0004842|GO:0016567
Rops10g01179 433 SUPERFAMILY RING/U-box 43 118 - -
Rops10g01179 433 Gene3D - 124 416 IPR011989 -
Rops10g01179 433 ProSiteProfiles U-box domain profile. 47 121 IPR003613 GO:0004842|GO:0016567
Rops10g01179 433 CDD RING-Ubox_PUB 49 101 IPR045210 -
Rops10g01179 433 SUPERFAMILY ARM repeat 92 413 IPR016024 -
Rops10g01179 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 123 IPR013083 -
Rops10g01179 433 PANTHER WDSAM1 PROTEIN 43 419 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01179 Rops-Chr10 24032856 24034322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01179 32 433 U-box Gene Family AT3G49810 64.925 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01179 - - gmx:100808281 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01179 10 24032856 24034322 Rops10g01179 10 24032856 24034322 ECH