Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01165 ATGGCTCCTTCTTCAGTTCCTCCTGAAATCACTATTGAATCTGAATATTGCCCTCAAGCGGTGATTGAGTGGTTCAAGCTCACAGGATCAGATGATCGAAGTGCATGGAAAAAGGATCTAGCTTTGAAAGCAAAGAAGCATCTTTGTTTTTTGGGTTGGGCCTTTTGGTATGTTGACAAGAAAGGTAGGTGGGAATTGCGTTATACATCACCCAACAATGGCAAGAACTATATTTCTCTCAGAAGGGCATGCGAGAGTTGCATAGAAGATGGAGGTTGTGGCCTTGAAAATGTTCACTTGGTTCATGAAACAAAGGGCCTCGTTAATGACACCCCCAAGAATGAGCACCCTTCAACATCTACTGCAACAATTTCATCTGATAAAGTTAACTTGATTCATGAAACAAAGGGTCTTCTTAATGGTAGCCCTAGGGCTGAACACCCGTCAACTTCAACCATTTCCTCTGAAAATGTTAACTTGATTCTTGAAACAAAGGGTCTAGTTAAGGGTATCCCTGGGGTTGAGTACCCTTCAACCATTTCATCTGAAAATGTTAACTTGATTCTTGAAACAAAGGGTCTTGTTAATGTTAGCCCTAGGGTTGAGCACCCTTCAACTTCAACCTCAACTGCAATAATTTCCTCTGAAAATGTTCAGTCGATTCATGAAAATAAGGGTCCAGTTAATGGTGGTACCCCTAAGGTTGAGAACCCTTTAACGATTTTCTCTTCTGCACAGAAGCCACCAAGAAAATGCAAGAAAACAAGGGTGAATGAGCCAAGAACATGCAAGAAAAGAAAAAGGGTGTCATCACCAGATGAAGAGTGGACCCAGGTGGGTAACCCTGAATTTGAAGCAGGTGGTAAAAGAGGTAAAGTATTACGATTAAGCAAAAGGGTAAGGCATGGTGATGATGCACAAAGTTCTGACTCTTCAGTGCGCAATCCTCGAACAATTGTGTCTTGGTTGATAGACAACAATGCGGTGATTTCAGAGTCCAAGGTATTATGCCGTGGAGGGAAAAATGTGGTGAAGAAAGGGAAGCTATTACGTTCTGGCATAGTTTGTGATTGTTGTGATGAGATTTTCACTCTCACTCGCTTTGAGGCTCATGCTGGTTGCACAAGGCATAGACCATCTAGCAGTATCTTTTTGGAAGATGGAAGATCATTGATGGAATGCCAAAGGGAAGCACTGGAAAAAATGCATCACTTCACACAAGGAGACAACAATTATCAAGACCAAAATGACAGCATTTGTTCAGTTTGTAATTATGGTGGTGACCTAATGCTATGTGATGGATGTCCCTCTTCATTCCACCACAGTTGTTTAGGTTTTGACCAAGTTCCTGATGGTGAATGGTTCTGCCCACAATGCTGTTGTAAAATATGCAACCGACCCAGATGCAGTGCAAATGATGTTGATAATGCTATCCTCATTTGTGAACAATGTGAGCACAAATATCACATGGGGTGTCTAAAGACTAGAGGGTTTACTAACGTCGAAAACAAGAAATGGTTCTGCAGTATGGTTTGTGAGAACATATTTTTCAGTCTGCAAAAGCTGATAGGAAAACAAATTCATGTGGGTTTTCATGTGGGTGGATATAATCTAACTTGGACTTTGTTGAAGGCAGTGAGAAGTGATAAACATGGAGGAGATCTTGCTTCTGATGATGACCTTGAAGGCTTGAGTCAATACGACAACAAGCTGAGTGAGGCTCTTGATTTATTGCATGAGTGTTTTGATCCAGTTATTGATGGTCTCTCAGGGAGAGATATTGTCTCAGATGTTATTTTCAGTAGAAGTTCTGTGTTTAGCCGTTTGAACTTTCGTGGGTTCTATACAGCGATTTTGGAGAGTAATGGGGAAGTGCTTTCTGTTGCCACTTTAAGGATTTATGGTCAGAAGGTTGCAGAACTACCTCTTGTGGCTACCAAGATGGGGCTTCGAAGGATAGGAATGTGTCGCATTTTGATGAATGAGCTTGAGAAGTTGTTGACTAAATTAGAAGTAGAGAACATGATTTTGCCTTCCTCTCCTAATGTGATAGACACTTGGACAAACTCATTTGGATTTGCTAGGATGACAGATTCAGATAAGTTTCAGTTTCTTGATTATACTTTTCTAAACTTTCAGGACACTATCCAGTGCCATAAACCATTGGTGAAACCTGCAGTGACAACATATATGGCCTAA 2199 0.4102 MAPSSVPPEITIESEYCPQAVIEWFKLTGSDDRSAWKKDLALKAKKHLCFLGWAFWYVDKKGRWELRYTSPNNGKNYISLRRACESCIEDGGCGLENVHLVHETKGLVNDTPKNEHPSTSTATISSDKVNLIHETKGLLNGSPRAEHPSTSTISSENVNLILETKGLVKGIPGVEYPSTISSENVNLILETKGLVNVSPRVEHPSTSTSTAIISSENVQSIHENKGPVNGGTPKVENPLTIFSSAQKPPRKCKKTRVNEPRTCKKRKRVSSPDEEWTQVGNPEFEAGGKRGKVLRLSKRVRHGDDAQSSDSSVRNPRTIVSWLIDNNAVISESKVLCRGGKNVVKKGKLLRSGIVCDCCDEIFTLTRFEAHAGCTRHRPSSSIFLEDGRSLMECQREALEKMHHFTQGDNNYQDQNDSICSVCNYGGDLMLCDGCPSSFHHSCLGFDQVPDGEWFCPQCCCKICNRPRCSANDVDNAILICEQCEHKYHMGCLKTRGFTNVENKKWFCSMVCENIFFSLQKLIGKQIHVGFHVGGYNLTWTLLKAVRSDKHGGDLASDDDLEGLSQYDNKLSEALDLLHECFDPVIDGLSGRDIVSDVIFSRSSVFSRLNFRGFYTAILESNGEVLSVATLRIYGQKVAELPLVATKMGLRRIGMCRILMNELEKLLTKLEVENMILPSSPNVIDTWTNSFGFARMTDSDKFQFLDYTFLNFQDTIQCHKPLVKPAVTTYMA* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01165 732 ProSiteProfiles Zinc finger PHD-type profile. 417 462 IPR019787 -
Rops10g01165 732 SUPERFAMILY FYVE/PHD zinc finger 407 469 IPR011011 -
Rops10g01165 732 CDD PHD_SF 460 510 - -
Rops10g01165 732 MobiDBLite consensus disorder prediction 246 287 - -
Rops10g01165 732 SMART PHD_3 419 460 IPR001965 -
Rops10g01165 732 SMART PHD_3 461 512 IPR001965 -
Rops10g01165 732 Pfam PHD-finger 419 461 IPR019787 -
Rops10g01165 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 460 IPR013083 -
Rops10g01165 732 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 573 698 IPR016181 -
Rops10g01165 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 515 IPR013083 -
Rops10g01165 732 PANTHER PHD FINGER PROTEIN 12 18 724 IPR042163 GO:0003714|GO:0045892
Rops10g01165 732 SMART ring_2 461 511 IPR001841 -
Rops10g01165 732 SMART ring_2 420 459 IPR001841 -
Rops10g01165 732 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 562 727 IPR000182 GO:0016747
Rops10g01165 732 Pfam Tify domain binding domain 347 398 IPR032308 -
Rops10g01165 732 SUPERFAMILY FYVE/PHD zinc finger 460 510 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01165 Rops-Chr10 23847511 23849709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01165 172 670 PHD Transcription Factor Family AT5G58610 38.547 2.07e-101 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops10g01165 TDBD 9.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01165 - - aprc:113866262 532.332