Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01163 ATGGATGATCTTTCTTCCAGCCTTCTTTGCCAAGAAAACGAAACGTTCTTGGAAGATGAGGTGAGTGATGAAGAATACTCATTCATTCAATCACAGCAGGATTGTGGGCTTTCAGAGGATGAGCATGTGGGTGTTTTGATTGAGAGAGAGATCGGTTTTGGGTTCAAAAAGGATGAAACTTTGGTGTTTGGGGACTGGATTAAACGTGCCCGTATGGATGCAATCAATTGGATTCTCAAAACAAGAGCAACATTTGGTTTTCGCTTTCAAACAGCTTATTTGTCTTTCACTTACTTCGATCGATTCCTTTCTAGGAAGTCCATTGATAGTGAAAAGTATTGGGCAATTCGGTTGTTATCAATTGCATGCCTTTCTTTGGCTGCAAAGATGGAGGAGTGCAATGTGCCGGGGCTATCAGAGTTTCAATGGGAAGATTATTCCTTTGAGGGAAAAGTGATTCAAAAAATGGAGCTTTTGGTGCTGAGCACATTGGAGTGGAATATGGGTATTATCACTCCCTTTGCTTTTCTTTCTTATTTCATCACAAAGTTCTGCAACGAATCCCCACCAAGTCCTATTTTTTCCAAGACCATGCAACTCATCTTCACCACAATGAAAGAGGTCAATTTAATGGATCACAGACCGTCTGTTATTGCAGCGGCTGCTACTTTGGTGGCACTAGATCAACAATTGACCATAGATGCAGTGGAGTTGAAGTTGAGTTCAATTCCTCAACATAGATCTCTTGAACCTAAAGATGTATTTGCATGCTATAGTCTAATTCAAAGATTATATGAGGAAGAGAAAACTAGAAGAGACAATGAGCTTTTACATACACCGAATTCTTCTTCACTCATCCGACCCAAGCCAATTGACATTGCAGAGAACTCTCTAGTTACTTCTGCTTCTATGACAAAGAGAAGACGACTCACATTCATTGATGATGAAGAAAGTAGTAAAGGGAAGGGACTCCAAAAGGAAGATCCAAAATTTTGA 996 0.4006 MDDLSSSLLCQENETFLEDEVSDEEYSFIQSQQDCGLSEDEHVGVLIEREIGFGFKKDETLVFGDWIKRARMDAINWILKTRATFGFRFQTAYLSFTYFDRFLSRKSIDSEKYWAIRLLSIACLSLAAKMEECNVPGLSEFQWEDYSFEGKVIQKMELLVLSTLEWNMGIITPFAFLSYFITKFCNESPPSPIFSKTMQLIFTTMKEVNLMDHRPSVIAAAATLVALDQQLTIDAVELKLSSIPQHRSLEPKDVFACYSLIQRLYEEEKTRRDNELLHTPNSSSLIRPKPIDIAENSLVTSASMTKRRRLTFIDDEESSKGKGLQKEDPKF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01163 331 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Rops10g01163 331 Gene3D - 164 281 - -
Rops10g01163 331 CDD CYCLIN_AtCycD-like_rpt1 70 166 - -
Rops10g01163 331 Gene3D - 64 163 - -
Rops10g01163 331 CDD CYCLIN_AtCycD-like_rpt2 171 261 - -
Rops10g01163 331 SMART Cyclin_C_2 171 290 IPR004367 -
Rops10g01163 331 Pfam Cyclin, N-terminal domain 69 168 IPR006671 -
Rops10g01163 331 MobiDBLite consensus disorder prediction 312 331 - -
Rops10g01163 331 SUPERFAMILY Cyclin-like 32 168 IPR036915 -
Rops10g01163 331 SMART cyclin_7 76 162 IPR013763 -
Rops10g01163 331 FunFam Cyclin-D5-1 66 169 - -
Rops10g01163 331 SUPERFAMILY Cyclin-like 154 281 IPR036915 -
Rops10g01163 331 FunFam Cyclin-D5-1 170 258 - -
Rops10g01163 331 Pfam Cyclin, C-terminal domain 171 272 IPR004367 -
Rops10g01163 331 PANTHER CYCLINS 45 263 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01163 Rops-Chr10 23798277 23799806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01163 8 221 Core Cell Cycle Gene Families AT4G37630 39.462 9.87e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01163 K18811 - gmx:100780266 479.174