Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01161 ATGGGAACGGATACTCCAGCGAATTACACATACATGAACGATGATTCCTCTTCCCCTTTCAGCGACTGCAACAGCGACAGATCTGGCGAATTCCCTCCTACAGCTTCTTCCCAAACCCGTCACCTTCTGGTGGCTTGCGCTAACGACAATCTCATTCGTCAGTTGGTAATTAATCTCGAGTCCTGTTCCATTGACGAACAAAAACAAGCCACCATGGAAATCAGGTTACTCGCCAAGAACAAACCAGAAAACCGCCTCAAAATCGCAAAAGCTGGTGCCATCAAACCGTTAATTTCACTTATATCATCACCGGATGTTCAGCTTCAGGAATACGTTGTTACAGCGATTTTGAATCTCTCACTCTGCGACGAGAACAAAGAGCTTATTGCTTCTTCACGTGCAATTAAGCCTCTGGTTGGAGCACTGAAAACAGGGACTCCAACAACGAAAGAGAATGCAGCGTGTGCTTTGCTTCGCCTCTCACATACGGAAGAGAACAAGGTGGTAATTGGAAGGTCAGGAGCTATTTCACTTCTGGTGAACCTTCTAGAGAATGGTGGCTTCCGCGGGAAGAAGGATGCATCGACGGCGCTGTATACGCTGTGTTCGGTGAATGAGAATAAGGTTAGGGCGATGAAAGCGGGGATTATGAAGGTGTTGGTGGAACTGATGGCGGATTTGGGGTCTAACATGGTGGATAAGTCGGCGTGTGTTTTGAGCGTGTTGGTGTCGGTGGCGGAGGCGAGGATGGCGTTGGTGGAGGAAGGAGGGATTCCTGTGTTGGTGGAAATAGTGGAGGTGGGGTCGCAGGGACAGAAGGAGATTGCGGTGGTTATTTTGTTGCAGATTTGTGAGGACAGTGTGGTTTTTCGTACCATGGTGTGTCGTGAAGGAGTCATTCCTCCTTTGGTTGCTTTGTCGCAGTCCGGAACCAATCGCGCCAAGCAAAAGGCAGAGACATTAATAGAGCTTCTACGACAACCAAGATCCGGCAACACCGCTGCTCATACCTCAGCAATGTAA 1023 0.4888 MGTDTPANYTYMNDDSSSPFSDCNSDRSGEFPPTASSQTRHLLVACANDNLIRQLVINLESCSIDEQKQATMEIRLLAKNKPENRLKIAKAGAIKPLISLISSPDVQLQEYVVTAILNLSLCDENKELIASSRAIKPLVGALKTGTPTTKENAACALLRLSHTEENKVVIGRSGAISLLVNLLENGGFRGKKDASTALYTLCSVNENKVRAMKAGIMKVLVELMADLGSNMVDKSACVLSVLVSVAEARMALVEEGGIPVLVEIVEVGSQGQKEIAVVILLQICEDSVVFRTMVCREGVIPPLVALSQSGTNRAKQKAETLIELLRQPRSGNTAAHTSAM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01161 340 SMART arm_5 204 244 IPR000225 GO:0005515
Rops10g01161 340 SMART arm_5 81 121 IPR000225 GO:0005515
Rops10g01161 340 SMART arm_5 245 285 IPR000225 GO:0005515
Rops10g01161 340 SMART arm_5 122 162 IPR000225 GO:0005515
Rops10g01161 340 SMART arm_5 163 203 IPR000225 GO:0005515
Rops10g01161 340 Pfam Armadillo/beta-catenin-like repeat 123 161 IPR000225 GO:0005515
Rops10g01161 340 Pfam Armadillo/beta-catenin-like repeat 164 203 IPR000225 GO:0005515
Rops10g01161 340 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Rops10g01161 340 FunFam RING-type E3 ubiquitin transferase 36 331 - -
Rops10g01161 340 SUPERFAMILY ARM repeat 43 323 IPR016024 -
Rops10g01161 340 PANTHER U BOX DOMAIN-CONTAINING 51 326 - -
Rops10g01161 340 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Rops10g01161 340 Gene3D - 190 332 IPR011989 -
Rops10g01161 340 Gene3D - 33 187 IPR011989 -
Rops10g01161 340 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01161 Rops-Chr10 23778896 23781593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01161 52 332 U-box Gene Family AT2G23140 50.178 1.13e-82 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01161 - - csv:101208714 513.072