Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01159 ATGGAAACTCTTGGAGCATTCCCTGATGGAGAATGGGAATGCTTTCGCAGAATCTTTGCCATTGAAGAGCATGATGGCTTGACACAACTACATGGTCCAAGCTCACTCCTGCTTGGGGAAGGTGATGGCAACATTGGAATACAATCCATGTTTTGCTCCACCCCTGAAGCTGGGGGAAATAAGAGTATGTTTTATGATTCTCACAACGCTAACTTGCAGTATATATCTCAAGAAAGTAGTCACAATAGCAATTGTAGTGGCAGTACTGTCTTCATGGCCAGTCCAGGCCATGCAAACTACAATTTTGATTATACAAATCACATGCTAGCAAATAATACCAATACATCCACGGGTTTTTGCACGATGGATGAGAACAAGCCAGGCTCTTTTGTCCAACCACTTACTGACTTTGTAATGGAAGAGAATTTAAGCTTGAATGAAGATGAGAGAAGTGTCGAACCTATTGTTTTTCCTGCCAAGCAGTTGAAGCTCAAAAGGGTGCTTGATGTGCCAGAATTGGAAGTGCATTTAGAAGATAAAATAAAATCCAATGGGAATTGTAAGAAGAAACCTCGTGTTCCAAAAGATGTGCAAAGATGCATGAAGAATGCGCGGTCCAAGAAGAACTGGAAGGTTGACAGTAATGAGAAGGAGGCAGAAGAAACTAATGCAGGTCCAGATGGACATAGCTCTAGTAGTTATACTTCAGAGGAGGATAATACTTCTCAGGAAAAGAGTGGAGGAGCTAAATCACCTGTGCCTCTCAACTCAAATGGGAAGACAAGAGCCAGTAGGGGATCAGCAACAGATACTCAGAGCCTTTATGCAAGGAAAAGAAGGGAGAGAATAAATGAGAGACTAAGAATTCTGCAGAATCTTGTACCCAACGGAACAAAGGTTGATATAAGCACAATGCTAGAAGAGGCAGTCCACCACGTTAAATTTTTGCAGCTCCAGATCAAGCTTCTAAGCTCTGATGATTTGTGGATGTACGCTCCGCTTGCTTATAATGGACTTGACATTGGACTCAATCTCAGCCGGAAGATTTCTCCATCTCAATAA 1062 0.4218 METLGAFPDGEWECFRRIFAIEEHDGLTQLHGPSSLLLGEGDGNIGIQSMFCSTPEAGGNKSMFYDSHNANLQYISQESSHNSNCSGSTVFMASPGHANYNFDYTNHMLANNTNTSTGFCTMDENKPGSFVQPLTDFVMEENLSLNEDERSVEPIVFPAKQLKLKRVLDVPELEVHLEDKIKSNGNCKKKPRVPKDVQRCMKNARSKKNWKVDSNEKEAEETNAGPDGHSSSSYTSEEDNTSQEKSGGAKSPVPLNSNGKTRASRGSATDTQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHHVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLSRKISPSQ* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01159 353 Gene3D - 266 325 IPR036638 GO:0046983
Rops10g01159 353 SMART finulus 273 322 IPR011598 GO:0046983
Rops10g01159 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Rops10g01159 353 MobiDBLite consensus disorder prediction 184 279 - -
Rops10g01159 353 Pfam Helix-loop-helix DNA-binding domain 277 317 IPR011598 GO:0046983
Rops10g01159 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Rops10g01159 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 339 - -
Rops10g01159 353 MobiDBLite consensus disorder prediction 225 273 - -
Rops10g01159 353 MobiDBLite consensus disorder prediction 184 224 - -
Rops10g01159 353 CDD bHLH_AtIND_like 268 330 - -
Rops10g01159 353 FunFam Basic helix-loop-helix transcription factor 268 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01159 Rops-Chr10 23757435 23758941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01159 229 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 70.079 1.21e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g01159 HLH 7.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01159 - - gmx:100779202 390.193