Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01139 ATGAGCGGTCTGTCGCAAGAAGAAGAAGAAAAGGATTCAAAAGAAGAGGAGAGAGAAGGAGAAGGAGAAGGAGAGGGGAAGCGGCTTCTAGAAGGTGAATCGGATGAGGAGGTTGCATATGAAACAGGGGAGAAGATCCTTGTTGTAGATTTTGAGTTTGACACGGTGGACGATTCGACGGTGCCTCCTTTCTCATGGAAGAAGCTTTGGGTTTTCACTGGGCCTGGGTTCTTGATGAGCATAGCGTTCTTGGATCCAGGGAATCTGGAAGGGGATCTTCAAGCTGGAGCCATCGCCGGTTACTCCCTCCTTTGGCTTTTGATGTGGGCCACCTTCATGGGCCTGTTGATCCAGCTTCTATCTGTTAGGGTTGGTGTTGCCACCGGTAGACACCTCGCTGAGCTTTGTAGGGATGAGTATCCCAATTGGGTTCGTCTTCTGCTTTGGTTCATGGCTGAGCTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGTAGTGCCATCGCCATCCAAATTCTTAGCAGAGGATTGTTCCCCCTATGGGTTGGAGTTCTAATTACTGCTTCCGATTGCTTTTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTAGAAGCTGCTTTTGCAGTTCTCATCGCTACCATGGCTCTTTCTTTTGCCTGGATGTTTGGTGACACAAAACCTAATGGAAAAGAACTTTTGATGGGTATTTTGATTCCAAGACTTAGCTCAAAAACAATTCGTCAGGCTGTGGGTGTTGTGGGTTGTGTCATAATGCCTCACAATGTATTCCTGCATTCTGCTTTAGTGCAGTCAAGGAAGATTGATCCCCATAAGAAAGGTCGGGTACAGGAGGCTATCAATTACTACTCAATTGAGTCAACAGCAGCACTTTTAGTCTCCTTCATGATCAATCTATTTGTCACAACAGTTTTTGCTAAGGGTTTCTATGGTACACAGCAGGCAAATAGCATAGGATTGGTGAATGCAGGACAGTATCTTGAGGAAAAGTATGGAGGAGGACTCTTCCCTATTCTTTATATATGGGGAATTGGGTTGTTGGCAGCTGGACAGAGTAGCACCATCACTGGCACATATGCTGGTCAATTCATAATGGGAGGTTTCCTCAACCTTCGTTTAAAGAAATGGTTGAGAGCATTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGTTCAGAAGCCTCATTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCATGCAAATTCCCTTTGCACTGATTCCCCTCCTCACGATGGTCTCCAAAGAGCAGATCATGGGGACTTTTCGGGTTGGGCCTGTTCTAGAGAGGGTGGCCTGGACTGTTGCTGCACTGATAATAGTAATTAATGGGTATCTCTTATTAGATTTCTTCCTTTCTGAGGTGAACAGCCTACTGCTTGGTTTTGTAGCCTGCTCCTGCACAGCTGCCTATGTTGCATTCATTGTATATTTGGTTTCACAGAGCGGTGCTCTTCCTTCCACACAAACTTGCACATGTTGCTTTTGTGAAGGAACATGGCCTATACTACCTGATGAGGGTGGCCAGGTAATGTTTAAAGGAGAGGAATAG 1629 0.4475 MSGLSQEEEEKDSKEEEREGEGEGEGKRLLEGESDEEVAYETGEKILVVDFEFDTVDDSTVPPFSWKKLWVFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSVRVGVATGRHLAELCRDEYPNWVRLLLWFMAELALIGADIQEVIGSAIAIQILSRGLFPLWVGVLITASDCFFFLFLENYGVRKLEAAFAVLIATMALSFAWMFGDTKPNGKELLMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPHKKGRVQEAINYYSIESTAALLVSFMINLFVTTVFAKGFYGTQQANSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNSSEASLDVLNEWLNVLQSMQIPFALIPLLTMVSKEQIMGTFRVGPVLERVAWTVAALIIVINGYLLLDFFLSEVNSLLLGFVACSCTAAYVAFIVYLVSQSGALPSTQTCTCCFCEGTWPILPDEGGQVMFKGEE* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01139 542 MobiDBLite consensus disorder prediction 1 37 - -
Rops10g01139 542 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 67 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 NCBIfam Nramp family divalent metal transporter 74 443 - -
Rops10g01139 542 Hamap Divalent metal cation transporter MntH [mntH]. 55 477 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 Pfam Natural resistance-associated macrophage protein 90 451 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 387 404 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 203 224 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 148 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 178 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 252 275 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 359 378 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01139 542 PRINTS Natural resistance-associated macrophage protein signature 421 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01139 Rops-Chr10 23549072 23558589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01139 4 509 Inorganic Solute Cotransporters AT1G47240 78.346 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01139 K21398 - gmx:100791117 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01139 10 23549072 23558589 Rops10g01139 10 23549072 23558589 ECH