Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01138 ATGCACGGAACACAGTGGCTGCTGCTGCCATCTCAGGCTCAGCGGCGGCAACAAACTTGGGCCTGGGCCCACATATTACCTCCTCTTACCATTTGGATTTGTGTTTCAGCCACTCTCCGTTACGGGTATTATGGGGATTCTCATATCCTACTTGGGCCTGCCTCGTCACGTTTGGTTAAGGCAAGCTCTGTTTTTGTGAAGCAACTTGAAGTATCAAACAAGCATAATAATAATAATCAAGCTATTCTTCTTCATGCCTTCAATGAGAAGCCTGAATTGAGCTCCCAAACTAATTGGACTACGTCGAATTTCTTCCTTGTTGCACCATATAAAAGCAAGGGAATTTCTTTGTGGTTGAATAAGGGCTCCACCATAAGTATGAGATGGGAAGCACATACTAGTAGTGGTGGTAGTTTGAATCAGCTACATGGGTTGGTGGTCAAAGGAGAAAACAAGTTTGAACAACTACAGCCTAAACAAACGAGCTTCCCTGATGCAATTGTTGTTCCTAAGACTCTTAATGGTAAAGAAGCTGAATATATCGTTGACGAAGATGGTAAATACCACGTTGGTGTTCGAAACATGAATGCTAGGAGCATAATCTTGACTATGAATGTTAATGTTTCGGCAAAGGTATATGATACCACCAAAGCCAAGAAGATGTGCTCTACTGCAAAAGGATCTTGTAGGCTTAGTTTTCTCTTCCCTAATACTCATTATGTTATTCTTACGGCAACCAACAACAATGGAGATGGAGGACCGTATGTTGATGTTTCTTTAGTGGCTCGTGTATTAACCTATGTATTACTTTTAGGATTTATTATGATTGTTGTTTATTTGATTCTCAAATTCCTTGGAGTCTCTGATGGTGATGATCAGATTCAGAATAATAATAATGTGATAGTAGACACATACATATCAAGTGATGTAGTTGCAACACAAAACGAAACTGAGCCTTTGATGCAAGTTAAGCCAAGTCTATTGTCATACGGAACAAATGCACAAGATGATGAAGAATCAAGAGCATCCAGTAGCACTTCAGAGGAATTATACGATGAAAAACTATGTGTCATTTGTTACGACGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATAGTCGATGAGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTTACAAAGTACGAAGATTATTTTATATTTAG 1227 0.4002 MHGTQWLLLPSQAQRRQQTWAWAHILPPLTIWICVSATLRYGYYGDSHILLGPASSRLVKASSVFVKQLEVSNKHNNNNQAILLHAFNEKPELSSQTNWTTSNFFLVAPYKSKGISLWLNKGSTISMRWEAHTSSGGSLNQLHGLVVKGENKFEQLQPKQTSFPDAIVVPKTLNGKEAEYIVDEDGKYHVGVRNMNARSIILTMNVNVSAKVYDTTKAKKMCSTAKGSCRLSFLFPNTHYVILTATNNNGDGGPYVDVSLVARVLTYVLLLGFIMIVVYLILKFLGVSDGDDQIQNNNNVIVDTYISSDVVATQNETEPLMQVKPSLLSYGTNAQDDEESRASSSTSEELYDEKLCVICYDEQRNSFFVPCGHCATCYDCAQRIVDEESKVCPICRRLIYKVRRLFYI* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01138 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 407 IPR013083 -
Rops10g01138 408 SMART ring_2 356 395 IPR001841 -
Rops10g01138 408 Pfam Domain of unknown function (DUF4793) 178 280 IPR032010 -
Rops10g01138 408 Pfam Zinc finger, C3HC4 type (RING finger) 353 401 - -
Rops10g01138 408 SUPERFAMILY RING/U-box 347 402 - -
Rops10g01138 408 PANTHER OS05G0521000 PROTEIN 13 406 - -
Rops10g01138 408 ProSiteProfiles Zinc finger RING-type profile. 356 396 IPR001841 -
Rops10g01138 408 Pfam Domain of unknown function (DUF4792) 84 153 IPR032008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01138 Rops-Chr10 23541688 23543745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01138 339 406 C3H Transcription Factor Family AT1G62370 33.824 4.21e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01138 - - gmx:100794488 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01138 10 23541688 23543745 Rops10g01138 10 23541688 23543745 ECH