Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01137 ATGGGGAGAGTGAAGCTTCAGATCAAAAAGATTGAGAACACAACAAATAGGCAAGTCACTTTCTCGAAGAGAAGAAATGGGCTCATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTAGCTCTTATCATGTTTTCCTCATCTGGGAGAGCCACTCTCTTCTCTGGCAATAGAAGCATTGAAGAAATTTTAGAACGATATATTAATCTTCCGGAGAGTGAACGTGGAAAGATGAATAATCAAGAGGTGCTTAGTAAGTTGAAAGCTGAAGCCGATCAAATGTGCCAAGCTCCTAGCCCCTTGATCACAGACCCCCAACTCGAGGGGATCCAAAGAGAAATTTTTGTTTGCAAATCTCAATTAGAAGAGATGGAGAAGCGACTAAGGATATTTGAAGGTGATCCTTCCGAGATCTCAACACTATGCGAGGCTGAATATCGTGAACAAGTCCTTCAGGAAACTCTAAAACAAGTGCAGCTGCGAAAATGTTTTTTGGAGGAAGAGCATAATTCGCGTGCATCTCCACATGTATACAAGGTACATCTTGCAAAAACTGTAGATGTAGATGTTGATGGATTTGTCACCAGAACCTCAAAGAACACAATAGACTGGTTTCTACAGGGAGATCCACATATTCAGATCCTGAACTTTGCAAATGCTTATGACTCTGCTCATCATCTCAGAGATCAACAATCACTTAGTACTGTTGTTGATATGGTAACCCCAACTTCGACCCTTCTGCACTCTGCAAACATGGATCAAGATGGTCAAATGAGTCCCAGGGATAGTGTAGAGGCTAGCATTAATAATATACTACGTCCTCAGTTTGGACAAGTTATCAACACCAATTCCTCCTCTTGGGAGCAACCCCATCATTTAGAGAGTGGAAGATCATTGTCAGTTGCAGAGACGAGGGAAGGACAACTCCTTGAACAGTATTTTTCTCAATTTACCCCGTCAAATATGTTAATACCCAATCAAGATCAACGTCATACATGA 1008 0.4107 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSSSGRATLFSGNRSIEEILERYINLPESERGKMNNQEVLSKLKAEADQMCQAPSPLITDPQLEGIQREIFVCKSQLEEMEKRLRIFEGDPSEISTLCEAEYREQVLQETLKQVQLRKCFLEEEHNSRASPHVYKVHLAKTVDVDVDGFVTRTSKNTIDWFLQGDPHIQILNFANAYDSAHHLRDQQSLSTVVDMVTPTSTLLHSANMDQDGQMSPRDSVEASINNILRPQFGQVINTNSSSWEQPHHLESGRSLSVAETREGQLLEQYFSQFTPSNMLIPNQDQRHT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01137 335 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Rops10g01137 335 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops10g01137 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops10g01137 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops10g01137 335 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops10g01137 335 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Rops10g01137 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Rops10g01137 335 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops10g01137 335 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 235 - -
Rops10g01137 335 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Rops10g01137 335 Coils Coil 110 130 - -
Rops10g01137 335 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01137 Rops-Chr10 23530055 23533004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01137 1 208 Type I MADS-box Gene Family AT1G22130 42.222 3.34e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops10g01137 SRF-TF 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01137 - - gmx:100776548 448.358