Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01136 ATGGAGACTCGCGCTGCTAATAGAAAGGCCAACCAAACCCAGAATCAACCCCTCAAAAAGCAACGTGTTGTGTTAGGGGAGCTCCCCAATTTACAAAGCCTCATTGTTCCTCAAAGCCTGAAAAATCCGAAGCTCAAGAAAGAAACGGTGACGAAGAAGAATGCTACTGCAAGGGTCAAGAAGGATAATAAGACAGTTGACAAAGACATTGACGCAAATTCAAGCACTAATGGCAAATCAGATGGTCCTTTTGTTTCAGAAATCTATAAGTATCTTCGTACAATGGAGATGGAGAAAAAACGAAGACCAATAACTGACTACATTGAGAAAGTTCAGAGAGATGTTACTTCTAACATGAGAGGAATACTGGTGGATTGGTTAGTGGAGGTTGCAGAGGAATACAAGCTTCTGTCTGATACCCTTCATCTCTCAGTTTCCTACATTGATAGGTTCCTATCTGCTAACCCTGTCAGTAAGGCAAGGCTTCAGTTGCTGGGTGTTTCAGCCATGCTCATTGCATCCAAATATGAAGAAATTAACCCACCCCACGTGGAAGAGTTCTGTTTCATTACTGATAACACATACAACAAGGCAGAGGTTGTAAAGATGGAAGCTGACGTACTCAAGACCCTTAATTTTGAAATGGGCAACCCTACTGTTTTGACCTTTTTAAGGAGGTTTACTGGGGTTGCTTGTAAGAACAAAAATGCTCCAAGTTTGCAGTTTGAGTTTTTGAGTAATTATCTTGCTGAGCTAAGCTTGTTGGACTATTATTGTTTGAAGTTCTTGCCTTCGTTGGTGGCTTCGTCCATAATATTGCTTGCTAGATTTATCGTTTGGCCTGAAGTTTATCCCTGGACACCAGCCTTGCGTGAATGCTCAGGGTATACATCAGTTGAATTGAATGAATGTGTTCTCATCTTACATGATTTGTATTTGGCAAGAAGGGGAGGGTCTTTTCAGGCTACTAGGGAAAAATACAAGCAGCACAAGTTTAAATATGTAGCAAACCTGCCTTCGCCTCCTCACTTACCAAATGATCTCTTTGAAGAAGAGTGA 1059 0.4136 METRAANRKANQTQNQPLKKQRVVLGELPNLQSLIVPQSLKNPKLKKETVTKKNATARVKKDNKTVDKDIDANSSTNGKSDGPFVSEIYKYLRTMEMEKKRRPITDYIEKVQRDVTSNMRGILVDWLVEVAEEYKLLSDTLHLSVSYIDRFLSANPVSKARLQLLGVSAMLIASKYEEINPPHVEEFCFITDNTYNKAEVVKMEADVLKTLNFEMGNPTVLTFLRRFTGVACKNKNAPSLQFEFLSNYLAELSLLDYYCLKFLPSLVASSIILLARFIVWPEVYPWTPALRECSGYTSVELNECVLILHDLYLARRGGSFQATREKYKQHKFKYVANLPSPPHLPNDLFEEE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01136 352 MobiDBLite consensus disorder prediction 1 20 - -
Rops10g01136 352 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g01136 352 PIRSF Cyclin_A_B_D_E 2 350 IPR046965 GO:0016538|GO:0044772
Rops10g01136 352 Gene3D - 101 216 - -
Rops10g01136 352 PANTHER CYCLINS 69 329 IPR039361 -
Rops10g01136 352 FunFam Cyclin A1 205 337 - -
Rops10g01136 352 Pfam Cyclin, C-terminal domain 218 340 IPR004367 -
Rops10g01136 352 MobiDBLite consensus disorder prediction 45 78 - -
Rops10g01136 352 Gene3D - 87 337 - -
Rops10g01136 352 CDD CYCLIN_AtCycA-like_rpt2 218 332 - -
Rops10g01136 352 Pfam Cyclin, N-terminal domain 87 215 IPR006671 -
Rops10g01136 352 SMART Cyclin_C_2 218 341 IPR004367 -
Rops10g01136 352 MobiDBLite consensus disorder prediction 45 69 - -
Rops10g01136 352 FunFam Mitotic cyclin 6 103 203 - -
Rops10g01136 352 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Rops10g01136 352 SUPERFAMILY Cyclin-like 84 215 IPR036915 -
Rops10g01136 352 SUPERFAMILY Cyclin-like 218 343 IPR036915 -
Rops10g01136 352 SMART cyclin_7 222 310 IPR013763 -
Rops10g01136 352 SMART cyclin_7 125 209 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01136 Rops-Chr10 23517546 23520016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01136 3 351 Core Cell Cycle Gene Families AT5G43080 55.524 4.33e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01136 K06627 - gmx:100776007 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01136 10 23517546 23520016 Rops10g01136 10 23517546 23520016 ECH