Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01135 ATGGAGACTCGTGCCTCAAAGAAGAGGGCAAACACTGCCGCACCAATCCTAGTCAACAATCAACAACACAAGAAGAAACGGGTTGTGTTGGGGGAACTTCCCAATCTACCCAACTTTCTTCTTCCTGCAACCTTGAATCAACCCAAACAGAAACTCCAATGTCGGAAGAATCCCAAGCTCAAGAAACCAGCTTCTAATCTCCCCTTGCCAGATTTCAAGTCGGTGAAGCCATTTAACAGTGACGAGGATGCCACGTGTAACGATCCACGGAATAGTGAACCTTATGTTTCCGACATCTTCAACTACCTTCATTCAATGGAGATGGAGAAAAAAAGAAGACCAATGATCGATTACATTCAGAAAGTTCAGAGAGGTGTTACTACTAACATGAGAGGGATATTGGTGGATTGGTTAGTAGAGGTTGCAGAGGAGTACAAGCTTCTCTCTGATACCCTTTATCTCTCTGTTTCCTACATCGATAGGTTCCTATCTGTTAACCCTGTCACTAAGTCCAAGCTTCAATTGCTGGGTGTTTCGTCCATGCTCATTGCATCCAAGTATGAAGAAATTAGTCCACCCAAAGCGAGAGATTTTTGCTCAATTACTGATAACACGTACAACAAGAAAGAGGTTGTAAAGATGGAAGCTGACATACTAAAAGCCCTAAATTTTGAAATGGGCAACCCAACTGTAAACACCTTTCTAAGGAGGTTTGCTGGGATTGCTTCTGAGAATCAAAACACTCTAGATTTGAAGACTGAATTTCTAGGAAACTATCTTGCTGAGCTGAGTTTGTTGGACTGTGATTGTATAAGATTCTTGCCTTCTATTGTGGCTGCATCAGTTATATTTCTTGCCAGATTCATTATCAACCCTGAAGTGCATCCTTGGACTTCATCCCTATGTGAATGCTCGGGTTATAAATCAGCTGAATTGAAAGAATGTGTTCTCATCTTACATGACTTGTATTTGTCAAGAAGGGCAGCATCATTCCAAGCTATTCGGGATAAATACAAGCAGCACAAGTTCAAATACGTGGCAAACCTGCCTTCCCCACCAGAGGTACCGAATAATTACTTTGAAGAACAATGA 1092 0.4176 METRASKKRANTAAPILVNNQQHKKKRVVLGELPNLPNFLLPATLNQPKQKLQCRKNPKLKKPASNLPLPDFKSVKPFNSDEDATCNDPRNSEPYVSDIFNYLHSMEMEKKRRPMIDYIQKVQRGVTTNMRGILVDWLVEVAEEYKLLSDTLYLSVSYIDRFLSVNPVTKSKLQLLGVSSMLIASKYEEISPPKARDFCSITDNTYNKKEVVKMEADILKALNFEMGNPTVNTFLRRFAGIASENQNTLDLKTEFLGNYLAELSLLDCDCIRFLPSIVAASVIFLARFIINPEVHPWTSSLCECSGYKSAELKECVLILHDLYLSRRAASFQAIRDKYKQHKFKYVANLPSPPEVPNNYFEEQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01135 363 SMART Cyclin_C_2 229 352 IPR004367 -
Rops10g01135 363 Gene3D - 98 348 - -
Rops10g01135 363 PANTHER CYCLINS 71 340 IPR039361 -
Rops10g01135 363 MobiDBLite consensus disorder prediction 50 72 - -
Rops10g01135 363 FunFam Cyclin superfamily protein, putative 226 298 - -
Rops10g01135 363 Pfam Cyclin, N-terminal domain 98 226 IPR006671 -
Rops10g01135 363 SUPERFAMILY Cyclin-like 229 353 IPR036915 -
Rops10g01135 363 CDD CYCLIN_AtCycA-like_rpt2 229 343 - -
Rops10g01135 363 Gene3D - 112 227 - -
Rops10g01135 363 Pfam Cyclin, C-terminal domain 229 351 IPR004367 -
Rops10g01135 363 FunFam G2/mitotic-specific cyclin 114 225 - -
Rops10g01135 363 SMART cyclin_7 233 321 IPR013763 -
Rops10g01135 363 SMART cyclin_7 136 220 IPR013763 -
Rops10g01135 363 ProSitePatterns Cyclins signature. 131 162 IPR006671 -
Rops10g01135 363 SUPERFAMILY Cyclin-like 87 226 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01135 Rops-Chr10 23510002 23512412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01135 1 362 Core Cell Cycle Gene Families AT5G43080 56.354 3.04e-141 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01135 K06627 - gmx:100787417 488.804