Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01127 ATGAACATCCTTGTCTTTCTCCTTCTTCTCCCCTTTGCCTCAACTTCATTTACGGCAACAGATACGCTCCCAGAAGGCTCATCTCTATTGGTCGAAAAACCAAGTGACACCCTGGTTTCATCCAATGGTGATTTCTCAGCTGGCTTCTTCCAAGTCGGGGACAACACTTTCTGCTTTTCCGTATGGTTCACAAGGTCCAAACAACCCACCGTTGTTTGGATGGCAAATCGGGACGAACCCGTCAACGGAAAAGACTCAAAATTATCACTTCAGAAAAATGGCAATCTGGTTTTGATCGATGCAGGAAGAACCATCATTTGGAACACCGAGAACTCGACCTTCTCCTCATTCCAGTTGCAGTTGAAGCTCATGAACAACGGCAACCTCGTACTTGTCACTTCACAAGGCACTATCATTTGGCAAAGCTTTGATTCCCCTACAGATACCCTTCTTCCAGGCCAAGCAGTGACCGAGAAAGCAAGCTTGATTTCATCAAGAAGCACAACGAACTTTTCTTCAGGTTTCTATAAACTTTATTTCGACAACGACAATGTTCTTCGCTTGCTTTTCAAAGGTCCTACGTTGTCTAGCGTGTACTGGCCTCGCTCTTGGGAATTACCAGTTAATATTGGCAGATCCACCTACAATGTAACCAAGATCGCTGTTCTAGATTCCTTTGGCCATTTCACGTCCTCTGATGGGTACCAATTCTTTTCCACTGATTATCACAGGAGACTCCATAGACGACTCAAGATGGATCCAGATGGTAACTTGCGTGTCTACAGCTTCAACAAGGACACTAAGATATGGGAAGTATCATGGCAAGTTATTTCACAACCATGTGAAATTCATGGTCTTTGTGGAGCTAACAGCATGTGCACTTATGATGCTGTCTCTGGAAGGACTTGCTATTGCTTGCAAGGTTATAAGGTTAAGAATCCAAATGATTGGACCCAAGGGTGCGAACCTGAGTTTAACCCTTCTGATCTCTCTTGTAACAGCAGTGAGTCTTTGGATTTCCTTCGTCTTCCAAGCACGGAGTTGTTCGGCTATGACTGGAACGTGACAAGTGTCACGAGCTTGAAGGAATGCCAAGATTTATGCTTGGAACTTTGTGATAAATGCAAAGGTATCCAACTCAAATTCAATGAAGCTGCTACTTATAATTGTTACCCTAAAACGTTACTACTCAATGGACGGGATTCCCCAGATTTTTCCGGAGACATCTATCTGAAATTGCCGAAAACGATTCTGCAATCTTCCAACAAGCCACTTAAACATTCACCGTTGAAGTGTTCCGTTGGTTTGTCTCAACCCTTGAATAGGATTTATCAAAAACCTAAAAGAAACTCCACCTTGAGTTTCTTGGTTTGGTTCGCTTGTGGTATAGGGGTCTTTGAGATGTCCACCATTTTCCTCGTGTGGTTCTTCTTGTTTAGAACCAACAAGCCAACAGATACAGGAGATCAAGAAAGGCACCTTCTTTCAGCTACGGGATTTCAAAGGTTCACCTATGCAGAGCTCAAAAGTGCGACGAGGGGTTTCAGCCAGGAGATTGGGCGAGGAGCAGGAGGGGTTGTATACAAAGGGAAGTTATATGACCATCGTGTTGCTGCTATCAAACGCTTAAGCGAAGCAAAACAAGGAGAAGCTGAATTCCTAGCTGAAATAAGCACCATTGGCATGTTGAACCACATGAACTTGATTGACATGTGGGGTTATTGCGTAGAGGGGAAGCACAGGCTCTTGGTGTATGAATATTTGGAGCATGGATCCTTAGCAGATAATCTATTTTCTAATGCACTTGATTGGAATAAGAGGTTTAATATAGCTGTGGGAACAGCCAAAGGTTTAGCTTATTTGCATGAAGAGTGCTTAGAATGGGTTTTACATTGTGATGTGAAGCCTCAAAACATTCTCCTTGACTCTGATTTCCAACCCAAGGTAGCAGATTTTGGCTTGTCAAAACTTTTAAATAGAGATGATGAGCGTGGCAATTCTGCATTTTCTAGAATAAGAGGAACTCGAGGTTACATGGCTCCTGAGTGGCTTTACAATCTACGCATTACCTCTAAAGTGGATGTTTATAGCTATGGGATTGTCATGTTGGAAATGGTAACTGGAAAGAGTCCAATGGAAATTCACAGCCTTGAGAACAGTACGGGCATACAGCAGCGTCGGTTGATGACGTGGGTGACAGATAAGATAAACAGTGCACCCACAACCATGTTTTGGATTGAGGAGATAACAGATCCCAACTTGGAAGGTCGATACGACATTTCGCAGGTTGAGATTTTGGTAAAAGTGGCTTTGCAATGCGTGCAAGATGACATGAATGAAAGACCCTCCATGAGCCAAGTAGTGGAGATGCTTCAGTGCCATGAAAATAGAGTTTCCCCTAGAAATTGA 2409 0.433 MNILVFLLLLPFASTSFTATDTLPEGSSLLVEKPSDTLVSSNGDFSAGFFQVGDNTFCFSVWFTRSKQPTVVWMANRDEPVNGKDSKLSLQKNGNLVLIDAGRTIIWNTENSTFSSFQLQLKLMNNGNLVLVTSQGTIIWQSFDSPTDTLLPGQAVTEKASLISSRSTTNFSSGFYKLYFDNDNVLRLLFKGPTLSSVYWPRSWELPVNIGRSTYNVTKIAVLDSFGHFTSSDGYQFFSTDYHRRLHRRLKMDPDGNLRVYSFNKDTKIWEVSWQVISQPCEIHGLCGANSMCTYDAVSGRTCYCLQGYKVKNPNDWTQGCEPEFNPSDLSCNSSESLDFLRLPSTELFGYDWNVTSVTSLKECQDLCLELCDKCKGIQLKFNEAATYNCYPKTLLLNGRDSPDFSGDIYLKLPKTILQSSNKPLKHSPLKCSVGLSQPLNRIYQKPKRNSTLSFLVWFACGIGVFEMSTIFLVWFFLFRTNKPTDTGDQERHLLSATGFQRFTYAELKSATRGFSQEIGRGAGGVVYKGKLYDHRVAAIKRLSEAKQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRLLVYEYLEHGSLADNLFSNALDWNKRFNIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSDFQPKVADFGLSKLLNRDDERGNSAFSRIRGTRGYMAPEWLYNLRITSKVDVYSYGIVMLEMVTGKSPMEIHSLENSTGIQQRRLMTWVTDKINSAPTTMFWIEEITDPNLEGRYDISQVEILVKVALQCVQDDMNERPSMSQVVEMLQCHENRVSPRN* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01127 802 SMART serkin_6 513 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01127 802 Gene3D - 14 145 IPR036426 -
Rops10g01127 802 Gene3D Phosphorylase Kinase; domain 1 480 587 - -
Rops10g01127 802 PANTHER OS07G0415500 PROTEIN 4 793 - -
Rops10g01127 802 FunFam S-receptor-like serine/threonine-protein kinase 482 587 - -
Rops10g01127 802 Gene3D Transferase(Phosphotransferase) domain 1 588 800 - -
Rops10g01127 802 Pfam S-locus glycoprotein domain 228 312 IPR000858 GO:0048544
Rops10g01127 802 Pfam Protein kinase domain 516 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01127 802 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Rops10g01127 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Rops10g01127 802 SMART ntp_6 335 413 IPR003609 -
Rops10g01127 802 SMART blect_4 29 146 IPR001480 -
Rops10g01127 802 SUPERFAMILY Protein kinase-like (PK-like) 492 792 IPR011009 -
Rops10g01127 802 PIRSF SRK 1 802 IPR024171 GO:0004674
Rops10g01127 802 CDD B_lectin 37 146 IPR001480 -
Rops10g01127 802 ProSiteProfiles Bulb-type lectin domain profile. 14 144 IPR001480 -
Rops10g01127 802 CDD PAN_AP_plant 329 414 - -
Rops10g01127 802 Pfam D-mannose binding lectin 70 158 IPR001480 -
Rops10g01127 802 FunFam Serine/threonine-protein kinase 588 799 - -
Rops10g01127 802 ProSiteProfiles Protein kinase domain profile. 513 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01127 802 CDD STKc_IRAK 519 792 - -
Rops10g01127 802 ProSiteProfiles PAN/Apple domain profile. 332 414 IPR003609 -
Rops10g01127 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 201 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01127 Rops-Chr10 23371090 23373498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01127 441 791 Receptor kinase-like Gene Family AT3G58690 36.702 3.99e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops10g01127 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01127 - - gmx:100816469 1280.39