Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01126 ATGGCCTCAGCGGATCGCATTAAAGGTCCATGGAGTCCTGAAGAGGATGAAGCGTTGAAGAGGCTGGTTCAGGCTTATGGCCCTAGAAACTGGTCTTTGATAAGCAAATCGATTCCGGGTCGATCCGGGAAGTCGTGCCGTTTGCGGTGGTGCAACCAGCTGTCGCCGGAGGTGGAGCACCGGCCTTTCACGCCGGAGGAAGATCAAACGATCATCAAAGCGCATGCCAAGTTCGGGAACAAGTGGGCCGCCATCGCTCGACTCCTCAATGGCCGCACTGACAACGCTATCAAGAACCATTGGAATTCCACCCTCAAGAGAAAATGCTCCGCCGTCGTGGATTCTCTCACTGACTACCAGAAGCCTCTAGAAAGATCCGCCAGTGTAGGTGCGGGTACAGTTTCGGGTTTAAATTTAAACCCGGGCAGTCCATCTGGATCCGATTTGAGTGATTCGAGTTTTCCCGTTTTGTCTTCTAACCCGACCCGGGTTTACAGACCGCTTGCAAGGAGTGTCACCCTCGCTGTCCCCTCTCCCTCCACTCAACCTGTGGAAACTGCGTCTTCGGCCAATGACCCACCCACGTCACTCACTTTATCTCTGCCCGGATCCGATTCCATTGGGTCCGGCCCGAATCAAGTATCCAGTAACAGCCCGACCCGGGAGTTCCAGCAGGCGTGTGAGTTAATTAGTTGTGAGAAGCAAATGTTCAGTGCGGAGTTTTTGGCGGTGATGCAAGAGATGATAAGAATGGAAGTGAGGAATTACATGTCAGGGTTGGAGCATGATAGAAACTCTATGGTGAAGCGTATGAGAATTGGAAAGGTTGAGTAG 834 0.524 MASADRIKGPWSPEEDEALKRLVQAYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDQTIIKAHAKFGNKWAAIARLLNGRTDNAIKNHWNSTLKRKCSAVVDSLTDYQKPLERSASVGAGTVSGLNLNPGSPSGSDLSDSSFPVLSSNPTRVYRPLARSVTLAVPSPSTQPVETASSANDPPTSLTLSLPGSDSIGSGPNQVSSNSPTREFQQACELISCEKQMFSAEFLAVMQEMIRMEVRNYMSGLEHDRNSMVKRMRIGKVE* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01126 277 SMART sant 7 56 IPR001005 -
Rops10g01126 277 SMART sant 59 107 IPR001005 -
Rops10g01126 277 Pfam Myb-like DNA-binding domain 11 69 - -
Rops10g01126 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 58 IPR017930 -
Rops10g01126 277 Gene3D - 62 108 - -
Rops10g01126 277 PANTHER MYB PROTEIN-RELATED 8 191 - -
Rops10g01126 277 SUPERFAMILY Homeodomain-like 5 101 IPR009057 -
Rops10g01126 277 CDD SANT 10 52 IPR001005 -
Rops10g01126 277 Gene3D - 7 59 - -
Rops10g01126 277 MobiDBLite consensus disorder prediction 131 154 - -
Rops10g01126 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 109 IPR017930 -
Rops10g01126 277 ProSiteProfiles Myb-like domain profile. 3 54 IPR001005 -
Rops10g01126 277 MobiDBLite consensus disorder prediction 176 220 - -
Rops10g01126 277 CDD SANT 62 105 IPR001005 -
Rops10g01126 277 FunFam Transcription factor MYB44 62 108 - -
Rops10g01126 277 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Rops10g01126 277 FunFam MYB transcription factor 8 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01126 Rops-Chr10 23355801 23357225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01126 5 261 MYB Transcription Factor Family AT4G37260 53.521 4.82e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g01126 Myb_DNA-bind_6 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01126 K09422 - cave:132184841 353.599