Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01113 ATGGAGAAGAGAAAGCAGTTAGGCATTCACCCACAGTCATGGGTCATAGTGTTAGTATTGTCAAATGCATTTTGTGATTGCTCCAAACTCCCAGATCATCATTCTCCACCGTTGTATCTCCGGGATGCAGGTGCATTACTTGCATTCAAACGAAAAGCTGATCTGAACAACAACCTTGACTTCTCCACCAAAACCCGTTTCTGCAACTGGCAAGGCGTGGAATGCAACGGAACCACAGTGGTTCGTCTCGTACTCCGAGGTTTAAACCTCGGAGGCGTTTTCGCTCCCAACACATTGTCTCGTCTTGACCAACTTCGTGTCCTTAGTTTACAAAACAACTCACTCACAGGTCCCATACCTGACCTCTCAGGTCTCTTCAATCTCAAAACACTGTTCCTCGACAACAACCACTTCACAGGTTCTCTTCCTCCTTCTCTTTTCACACTTCACAGGCTTCGAACCTTGGATTTCTCACACAACAATCTCTCAGGTCCCATTCCCATTACTTTCACCAAACTTGACCGTCTCTATTACCTTCGTTTAAGCTGGAACACTTTCAATGGTTCCATCCCTCCTCTTAACCAATCCTCTCTCAAAACATTCGATGTCTCCGGTAACAATCTCTCCGGTGCCATTCCTCTAACTCCCACGTTGTCTCGTTTTCAACCTTCTTCCTTCGCTTCTAACCCTTCTCTTTGCGGCGAAATCATAAAAAAACAATGCCACCCCACCGCGCCGTTCTTCGCCCCCAGCTCGCCGCCGACGGTGGGGCTCGGCCAGAGCGCGCAAGTTCACGGCTTTCTCCGGCAGCCCTATGAAAAGAGGCACGACCGGAGGGCGGTGATTATAGGGTTCTCCGCCGGAATCTTTGTCTTAATCGGTTCTATATTGTGCTTCGTCTTGGCCATCAAGAAACAGAGAAGTAAAAAAGGAGTTTCTTCTTCGGGTTCCGCTATAATGGCTTCAGATGCGGCGGCGACGGCGGAAGCTGCGGCGATGATGCAGATGGAGCAAGAGAGGGAGTTGGAAGAGAAAGTGAAAAGGGCACAAGTGGCAAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAGGCGCAGGTTTATACCCTGGACCAGTTGATGAAAGGGTCTGCTGAACTATTGGGTAGAGGGCGTTTTGGAACAACTTATAAGGCGGTGCTGGATAACCGTCTGATCGTGACGGTGAAGCGCCTTGATGCGACTAAAATGGCTGCTCATGTAACAAAGGAAGTGTTTGAGCGACACATGGAATCAGTGGGTGGTCTTCGTCATCCTAATTTGGTTCCTTTAAGGGCTTATTTTCAGGCCAATCAAGAGAGACTCATTATCTATGATTACCAACCCAATGGCAGTCTCTTCTCCCTCGTACACGGTTCCAGATCAAGCTGGGCAAGGCCGTTGCACTGGACATCATGTTTGAAAATAGCAGAAGACATAGCACAAGGGCTGTCCTACATCCACCAGGCATGGAGACTTGTCCATGGCGATCTCAAGTCCTCCAATGTTCTCCTTGGACCCGATTTCGAGGCATGCATCACAGACTACTGCTTGTCTGTGTTGACCAACCCATCTATCTTAGATGAAGATGGTGACTCTGCAGCCTATAGAGCTCCAGAGGTTCGCAATCCAAACCATCAGCCAACCCCCAAATCCGATGTTTATGCTTATGGAATTATGTTGCTGGAGCTTCTGACTGGGAAATCTCCTTCCGAGCTTCCATTCATGGTTCCTGGTGATATGTCAAGTTGGGTTAGGTCCATCAGGGATGACAATGGGGCCGAAGATAGCCGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCTGAGCAGAGGCCAACAATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTATTGGAGGATAGTGAATTGAACCTAAGCAGTAGTAATGCCATGCCTTAG 1968 0.4842 MEKRKQLGIHPQSWVIVLVLSNAFCDCSKLPDHHSPPLYLRDAGALLAFKRKADLNNNLDFSTKTRFCNWQGVECNGTTVVRLVLRGLNLGGVFAPNTLSRLDQLRVLSLQNNSLTGPIPDLSGLFNLKTLFLDNNHFTGSLPPSLFTLHRLRTLDFSHNNLSGPIPITFTKLDRLYYLRLSWNTFNGSIPPLNQSSLKTFDVSGNNLSGAIPLTPTLSRFQPSSFASNPSLCGEIIKKQCHPTAPFFAPSSPPTVGLGQSAQVHGFLRQPYEKRHDRRAVIIGFSAGIFVLIGSILCFVLAIKKQRSKKGVSSSGSAIMASDAAATAEAAAMMQMEQERELEEKVKRAQVAKSGSLIFCAGEAQVYTLDQLMKGSAELLGRGRFGTTYKAVLDNRLIVTVKRLDATKMAAHVTKEVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLVHGSRSSWARPLHWTSCLKIAEDIAQGLSYIHQAWRLVHGDLKSSNVLLGPDFEACITDYCLSVLTNPSILDEDGDSAAYRAPEVRNPNHQPTPKSDVYAYGIMLLELLTGKSPSELPFMVPGDMSSWVRSIRDDNGAEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSELNLSSSNAMP* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01113 655 ProSiteProfiles Protein kinase domain profile. 374 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01113 655 SUPERFAMILY L domain-like 55 234 - -
Rops10g01113 655 SUPERFAMILY Protein kinase-like (PK-like) 378 633 IPR011009 -
Rops10g01113 655 ProSiteProfiles Leucine-rich repeat profile. 104 126 IPR001611 GO:0005515
Rops10g01113 655 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 636 IPR046959 -
Rops10g01113 655 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Rops10g01113 655 Gene3D Phosphorylase Kinase; domain 1 337 452 - -
Rops10g01113 655 Gene3D Ribonuclease Inhibitor 40 194 IPR032675 -
Rops10g01113 655 Gene3D Ribonuclease Inhibitor 195 243 IPR032675 -
Rops10g01113 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Rops10g01113 655 SMART serkin_6 374 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01113 655 FunFam Nuclear pore complex protein NUP107 40 192 - -
Rops10g01113 655 Pfam Protein kinase domain 378 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01113 655 Gene3D Transferase(Phosphotransferase) domain 1 454 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01113 Rops-Chr10 23094237 23098067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01113 41 653 Receptor kinase-like Gene Family AT5G43020 60.032 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops10g01113 Pkinase 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01113 - - cam:101511242 1006.9