Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01109 ATGGAAGAAGAAAGAGACTGTTGTTCATCCAATTCCACGATCACAAGCAGCAGCCACAAAAAGAAGAGGCAACAACACCAACACCAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAAATTAGAGAACCCAACAAAAGGTCCAGGATTTGGTTGGGTTCATACACCACACCTGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTTTACCTGAGAGGCCCTTCAGCTCGCCTCAACTTCCCGGAATTGTTGTTCCAAGACGAAGACGGTGACGGTGAGGGTTCAATCCAACAAGGTAACATGTCCGCTGATTCAATACGCAAAAAAGCCACACAAGTCGGTGCCAGAGTGGACGCTTTTCAATCAGCTCTTCAAGCTTCCTCCTCCCACTCCAATTCCAGTCAAATCACCTCTGAAAAACCAGACTTGAACGAATATCCAAAATCTGAAGAAGATTCCCCTTAA 489 0.4826 MEEERDCCSSNSTITSSSHKKKRQQHQHQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEDGDGEGSIQQGNMSADSIRKKATQVGARVDAFQSALQASSSHSNSSQITSEKPDLNEYPKSEEDSP* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01109 162 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Rops10g01109 162 MobiDBLite consensus disorder prediction 101 115 - -
Rops10g01109 162 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Rops10g01109 162 MobiDBLite consensus disorder prediction 1 34 - -
Rops10g01109 162 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Rops10g01109 162 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Rops10g01109 162 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Rops10g01109 162 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Rops10g01109 162 MobiDBLite consensus disorder prediction 130 150 - -
Rops10g01109 162 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Rops10g01109 162 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Rops10g01109 162 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Rops10g01109 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 159 - -
Rops10g01109 162 MobiDBLite consensus disorder prediction 130 162 - -
Rops10g01109 162 MobiDBLite consensus disorder prediction 93 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01109 Rops-Chr10 23009562 23010585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01109 17 140 AP2-EREBP Transcription Factor Family AT1G46768 61.069 7.33e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g01109 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01109 K09286 - gmx:100801528 207.223