Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01108 ATGGGAAGCATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCATGAACCCTCCCTCACGCTTGGGTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTCCCAACACAGACAGCACCACCACTCCTTCTGTTCCCTTCGATCTCAAGAGCTTCATCAGACCAGAAAGTGGCCCCAGAAAACTCATATCTTCTGACGATAATAAGAAAGATCCACCTTCACCTCAGGGCCAGGTTGAAACGCATCCTGGAGGGACAAGGTGGAATCCGACGCAAGAACAGATAGGAATATTGGAGATGCTGTACAGAGGAGGGATGCGAACTCCAAATGCTCAACAGATAGAGCAGATCACGGTCCAGCTTAGCAAATATGGCAAAATTGAAGGGAAGAATGTGTTTTATTGGTTTCAAAACCATAAAGCACGCGAGAGACAAAAGCAAAAGCGCAACAGTCTTGGCCTTTCTCATAGTCCTCGAACTCCAACCATTCATAATATAACTTTGGAGACAAGGGGGGAAGTGTTGGAAAGAGAACAGGAAGATAGTCCGTACAAGAAGTGTAGGAGATGGGTATTTGAGTGCTTGGAAGAGCAAAGCAGGTCAACATGTAAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 666 0.4775 MGSMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLPNTDSTTTPSVPFDLKSFIRPESGPRKLISSDDNKKDPPSPQGQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTPTIHNITLETRGEVLEREQEDSPYKKCRRWVFECLEEQSRSTCKEEEHRTLELFPLHPEGR* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01108 221 MobiDBLite consensus disorder prediction 32 91 - -
Rops10g01108 221 SMART HOX_1 83 150 IPR001356 GO:0003677
Rops10g01108 221 SUPERFAMILY Homeodomain-like 82 152 IPR009057 -
Rops10g01108 221 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Rops10g01108 221 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 221 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Rops10g01108 221 CDD homeodomain 86 147 IPR001356 GO:0003677
Rops10g01108 221 Pfam Homeodomain 86 145 IPR001356 GO:0003677
Rops10g01108 221 Gene3D - 85 152 - -
Rops10g01108 221 FunFam WUSCHEL-related homeobox 4 85 152 - -
Rops10g01108 221 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01108 Rops-Chr10 22962840 22964032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01108 4 171 Wox Gene Family AT1G46480 61.290 2.30e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops10g01108 Homeodomain 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01108 - - gmx:100781015 394.045