Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01107 ATGGCGCAAATTCAAGAAAGTTCCAATGCCGACGCGGTGGCTCCGGTTGAAGACCAGTTGCTGAAGACGACCGCGTTGTACGTTGGTGATCTTGACCATAACGTCAACGATTCGCAGCTCTATGATCTCTTTAACCAGATAGGCCAAGTTGTTTCTGTTCGAATTTGCAAGGACTACGCCACTCAGCAATCCCTAGGTTACGGCTATGTCAATTTCAGTAACGCTCAAGACGCCGCGAAGGCGTTGGAGGTGCTAAATTTCACTCCACTGAACAACAAACCTATTAGGATAATGTACTCTGATCGTGACCCTTTTATTCGGAGGACTGGTCATGCTAATATTTTCATCAAGAATTTGGATACGGCAATCGATCACAAAGCTTTACATGATACTTTTTCGGCTTTTGGAAATATTCTTTCTTGCAAGATAGCGATGGATGCTTCTGGCCAGTCTAGAGGCCATGGTTATGTGCAATTTGAGAAGCTAGAATCTGCACAAAATGCAATCGACAAGTTAAATGGCACGCTGATTAATGATAAACAGGTCTATGTAGCTCATTTCCAATCAAAGAAGGATAGAGAGAATGCTCTCAATAGTGCAACGTTTAATAATGTCTATGTGAAAAACCTATCGGAGTCAATGACTAATGATGACTTGAAGAAAACTTTCGAAGAATATGGAACCATTACCAGTGCTGTAGTGATGAGAAATGTAGATGGTACATCGAAGTGTTTTGGTTTTGTAAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGGCGATAAGGAATGGTATGTCGGAAAAGCGCAGAAAAAATCTGAAAGGGAGCTTGAACTGAAAGAACACATGAAAGAAGCTGTTGACAAATATCAAGGTTCAAACTTGTATCTGAAGAACTTGGATGATAGCATTAGTGATGAAGAACTCAGGGAACTGTTCTCTGAGTTTGGTACAATAACTTCATGCAAGGTTATGCGAGATCCACATGGAGTTAGTAGAGGATCTGGATTTGTTTTATTTTCAACTCCCGAGGAAGCAAATCGAGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAAAAAAGAAGAGAGAAGAGCAATGTTACAGGCGCAATTTTCACAAATGAGGCCTGTTACAATGGCCCCTTCTCTTGCACCTCCTATGCCACTGTACCATCCAGGGGCTCCTGGGATAGGACAACAATTTTTGTATGGGCAAGCACCTACAGCCATCATACCTCAAGCTGGATTTGGTTACCAGCAGCAACACTTCCCTGGAACGAGACCAGGTGGTGCTCCATTGCCGATCTTTTATGTTCCACTGGTTCAGCAGGGTCAACAAGGTCAGCGACCAGGTGGACACCGAGGAGCAGGTCCTATGCAACAACTGCCGCAGCCAGTGCCATTGATGCAGCAACAGATGCTTCCAAGGGGGCATGTCCATCGATATCCTCCTGGTCGGAACATGGGTGGTCAGCCCATCTGGGATGCCGGGGGAATTCCCACTCAGGCCCTAGCTACAGCCCTTGCAAATGCTTCTCCTGAACAGCAAAAGACTATGCTTGGTGAAGTTTTATACCCGTTAGTAGATAAGCTGGATCATACTGCAGCAGCAAAGGTTACTGGTATGATTTTGGAGATGGACCAGCCTGAGGTGTTACATCTGATTGAGTCACCAGACGCTCTCAAGGCAAAAGTTGCTGAGGCCATGAATGTGTTGACAAATGTTGCCCAGCAGCAATCAAACAACCCAGCTGATCGACTGGCTTCACTCTCTCTGAATGACTAA 1845 0.4472 MAQIQESSNADAVAPVEDQLLKTTALYVGDLDHNVNDSQLYDLFNQIGQVVSVRICKDYATQQSLGYGYVNFSNAQDAAKALEVLNFTPLNNKPIRIMYSDRDPFIRRTGHANIFIKNLDTAIDHKALHDTFSAFGNILSCKIAMDASGQSRGHGYVQFEKLESAQNAIDKLNGTLINDKQVYVAHFQSKKDRENALNSATFNNVYVKNLSESMTNDDLKKTFEEYGTITSAVVMRNVDGTSKCFGFVNFENADAAAKAVEALNGKKFGDKEWYVGKAQKKSERELELKEHMKEAVDKYQGSNLYLKNLDDSISDEELRELFSEFGTITSCKVMRDPHGVSRGSGFVLFSTPEEANRALGEMNGKMVAGKPLYVALAQKKEERRAMLQAQFSQMRPVTMAPSLAPPMPLYHPGAPGIGQQFLYGQAPTAIIPQAGFGYQQQHFPGTRPGGAPLPIFYVPLVQQGQQGQRPGGHRGAGPMQQLPQPVPLMQQQMLPRGHVHRYPPGRNMGGQPIWDAGGIPTQALATALANASPEQQKTMLGEVLYPLVDKLDHTAAAKVTGMILEMDQPEVLHLIESPDALKAKVAEAMNVLTNVAQQQSNNPADRLASLSLND* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01107 614 SUPERFAMILY PABC (PABP) domain 476 610 IPR036053 GO:0003723
Rops10g01107 614 Gene3D - 104 192 IPR012677 -
Rops10g01107 614 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Rops10g01107 614 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 520 597 IPR002004 GO:0003723
Rops10g01107 614 CDD RRM4_I_PABPs 301 379 - -
Rops10g01107 614 Gene3D - 2 103 IPR012677 -
Rops10g01107 614 SMART rrm1_1 113 185 IPR000504 GO:0003723
Rops10g01107 614 SMART rrm1_1 204 276 IPR000504 GO:0003723
Rops10g01107 614 SMART rrm1_1 303 375 IPR000504 GO:0003723
Rops10g01107 614 SMART rrm1_1 25 98 IPR000504 GO:0003723
Rops10g01107 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 372 IPR000504 GO:0003723
Rops10g01107 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Rops10g01107 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Rops10g01107 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Rops10g01107 614 FunFam Polyadenylate-binding protein 516 598 - -
Rops10g01107 614 Gene3D - 193 290 IPR012677 -
Rops10g01107 614 Gene3D - 291 392 IPR012677 -
Rops10g01107 614 SMART rrm2_1 204 276 IPR003954 GO:0003676
Rops10g01107 614 SMART rrm2_1 113 185 IPR003954 GO:0003676
Rops10g01107 614 SMART rrm2_1 303 375 IPR003954 GO:0003676
Rops10g01107 614 SMART poly_2 532 595 IPR002004 GO:0003723
Rops10g01107 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Rops10g01107 614 PANTHER RNA BINDING PROTEIN 24 86 - -
Rops10g01107 614 Pfam Poly-adenylate binding protein, unique domain 528 592 IPR002004 GO:0003723
Rops10g01107 614 FunFam Polyadenylate-binding protein 194 286 - -
Rops10g01107 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Rops10g01107 614 Gene3D - 517 599 - -
Rops10g01107 614 SUPERFAMILY RNA-binding domain, RBD 200 284 IPR035979 GO:0003676
Rops10g01107 614 FunFam Polyadenylate-binding protein 287 390 - -
Rops10g01107 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 379 IPR000504 GO:0003723
Rops10g01107 614 CDD RRM2_I_PABPs 110 186 IPR045305 -
Rops10g01107 614 FunFam Polyadenylate-binding protein 107 193 - -
Rops10g01107 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Rops10g01107 614 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 592 IPR006515 GO:0003723
Rops10g01107 614 SUPERFAMILY RNA-binding domain, RBD 297 395 IPR035979 GO:0003676
Rops10g01107 614 FunFam Polyadenylate-binding protein 3 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01107 Rops-Chr10 22887477 22891321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01107 24 613 Eukaryotic Initiation Factors Gene Family AT4G34110 63.439 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01107 K13126 - gmx:100784442 885.174