Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01105 ATGATGAGTTCCCCTGCCGTTCGACGCGTTTCAGAATGTTTCATCAAGCCGCTGCGCCCCATTGAAGAGTCAAACCAAATCTGCTATCTAACCCCTCAGGATATTGCTATGTTGTCTGTACACTATATCCAGAAGGGGCTTCTCTTCAAGAAACCCGCACCGCTTGTTGATAATCAAGGTTTCATGGAGAATCTGTTGGATAAGCTCAAACACTCCCTTTCTCTCGCCCTTGTCCATTTTTATCCATTGTCTGGCCGTCTTGTCACCCAGAAAACCCAAGACCCTCCCTCTTATGCTGTTTTCGTTGATTGCATAAACAGTCCTGGAGCTAGGTTTATTCATGCAACTTTAGATATGACCATATCCGACATACTCTCACCCGTTGATGTTCCACCCATTGACCAGTCATTGTTTGACCATGACAGAGCAGTCAACCATGACGGCCATACCATGCCCTTGTTGTCCATTCAGGTCACTGAACTAGTGGATTGCATTTTCATAGGTTGTTCCATGAACCACTGTCTTGCTGATGGGACTTCTTATTGGAATTTCTTTAATACATTGTCTAAGATCTTTCAAGCTCAAGCTCAAGGGCGTGAACATGATGTTCCCATTTCACACCCACCCATTCACAATAGATGGTTTCCAGAAGGTTGTGGTCCACTAATCAATCTTCCCTTCAAACATCATGACGAGTTTATTGGCAGATTTGAAGCACCCAAGATGAGAGAAAGAATCTTCCACTTTACAGCAGAGTCTATTGCGAAACTGAAAGCAAAGGCCAACTTAGAGTCTAACACCACCAAGATCTCTTCATTCCAATCCTTATCAGCACTTGTTTGGAGATGCATGACTCGTGCACGCCGCCTACCACATGATCAGAGAACCAGTTGCAAGTTGGCCGCAAACAACAGATCAAGAATGGAACCGCCTATTCCTGAGGCATACTTCGGAAACTCAATTCATGCAATTGGTACAGAAACGATTGCAGGGGAATTGCTTAAGAATAATCTGGGATGGGCAGCATGGAAAGTACACCTGGCTGTTGCAAACCACAACGACGGAGTGGTGCGCCAGTCGATCAAAGAGTGGTTACAGTCTCCGGTCATCTTCCGAATTGATCTGTTCTTTGACCCGCATAGTGTGATGATGGGTAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCGGTGGCAGTTAGAAGTGGATATGCCAACAAATTTGATGGAAAAGTGACGTCATACCCGGGCTATGAAGGAGGGGGAAGCATAGATTTGGAAGTGTGTCTTTTTCCAGATACAATGAGCGCGCTGGAATCAGACGAGGAGTTCATGAATGCAATTTAA 1362 0.4508 MMSSPAVRRVSECFIKPLRPIEESNQICYLTPQDIAMLSVHYIQKGLLFKKPAPLVDNQGFMENLLDKLKHSLSLALVHFYPLSGRLVTQKTQDPPSYAVFVDCINSPGARFIHATLDMTISDILSPVDVPPIDQSLFDHDRAVNHDGHTMPLLSIQVTELVDCIFIGCSMNHCLADGTSYWNFFNTLSKIFQAQAQGREHDVPISHPPIHNRWFPEGCGPLINLPFKHHDEFIGRFEAPKMRERIFHFTAESIAKLKAKANLESNTTKISSFQSLSALVWRCMTRARRLPHDQRTSCKLAANNRSRMEPPIPEAYFGNSIHAIGTETIAGELLKNNLGWAAWKVHLAVANHNDGVVRQSIKEWLQSPVIFRIDLFFDPHSVMMGSSPRFNMYGNEFGMGKAVAVRSGYANKFDGKVTSYPGYEGGGSIDLEVCLFPDTMSALESDEEFMNAI* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01105 453 Gene3D - 234 445 IPR023213 -
Rops10g01105 453 Gene3D - 9 221 IPR023213 -
Rops10g01105 453 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 451 - -
Rops10g01105 453 FunFam Tryptamine hydroxycinnamoyl transferase 229 446 - -
Rops10g01105 453 Pfam Transferase family 12 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01105 Rops-Chr10 22877821 22879321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01105 69 444 Monolignol Biosynthesis Gene Families AT5G48930 28.967 7.09e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01105 - - gmx:100787228 738.413