Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01103 ATGTTCAAAGCAAGAGTAACCATCCCCCGGTTCAGATATGTCACCGGAATTACATCTCTGTGCTCTGTACAACAGAATTCTGCATTCTGTAACAGTATTCGGACACTGAATTCCACTGCCGTCCAACACGTTTCAGAATGCTTCATCAAGCCACAGCGCCCCACCGAAGAGTCAAACCAAATCTGCCATTTAACACCTGAGGATCTTTCTGGGTTGTCTCTAAATTATATCCAGAAGGGCCTGCTATTCAAAAAGCCATCACCACTATATAACCAACAAGATTTCATCCACAATGTGTTGCACAAGCTCAAACACTCCCTTTCCCTCGCCCTCGTCCATTTCTATCCATTGGCTGGCCGTCTTGTCACCCACAAAACCCAATACCCTCCCTCTTATTCTATTTTCGCTGATTGTAGAAATGGTCCAGGAGCTAGATTTATCTATGCAACTTTAGATATGACCATATCCGACATCATCTCCCCCATTGATGTCCCACCCATTGTTCAGTCATTGTTTGATCATGACAGAGCAGTCAACCATGACGGTCATACCATGTCTTTGTTGTCTATCCAGGTAACTAAACTATTAGATGGTGTTTTCATAGGTTGTTCCATGAACCACTCTATTGCTGATGGGACTTCTTATTGGCATTTCTTTAATACATTGTCTGAGATCTTTCAAGCTCAAGGCCAAGGGCAGGAACATGATGTTCCCATTTCACACCCACCCATTCACAATCGATGGTTTCCAGAAGGTTTGGGTCCAGTAATTAATCTTCCCTTCAAACATCATGACGAGTTTATTTGCAGACATGAAGCACCCAAGATGAGAGAGAGAATCTTCCGATTTACAGCAGAATCTATTGCAAAGCTGAAAGCAAAGGCCAACTCAGAGTCTGATACCACCAAAATATCTTCATTCCAATCCTTGTCAGCACTTGTTTGGAGATCCATAACTCGTGCACGATGCCTATCAAATGATCAGATAACCAGCTGCAAAATGGCTATCAACAACCGATCAAGAATGGAACCACCTCTTCCTGAGACATACTTTGGAAACTCAATTCTTGCAATCAGTGCAGAGACAACTGCAGGGGAATTGCTTGAGAATAATCTGGGATGGGCAGCATGGAAGGTACACCTGGCTGTTGCAAACCATGATGACAGAGTGGTGCGCCGCTCGTTCAAAGAATGGTTACAATCTCCGTTCATGTATCGAAATGACTTGTTTGACCCGTATAGTGTGATGATGGGTAGTTCACCGAGATTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCAGTGGCAGTTAGAAGTGGATATGGCAACAAATTTGATGCAAAAGTGACATCATACCCAGGCCATGAAGGAGGGGGAAGCATAGACTTGGAGGTGTGTCTTTTGCCAGATACGATGAGTGCGCTGGAATCAGACAAAGAGTTTATGAGTGCGGTTTCAGTGTCCAATCCCTTGTACTAG 1482 0.4386 MFKARVTIPRFRYVTGITSLCSVQQNSAFCNSIRTLNSTAVQHVSECFIKPQRPTEESNQICHLTPEDLSGLSLNYIQKGLLFKKPSPLYNQQDFIHNVLHKLKHSLSLALVHFYPLAGRLVTHKTQYPPSYSIFADCRNGPGARFIYATLDMTISDIISPIDVPPIVQSLFDHDRAVNHDGHTMSLLSIQVTKLLDGVFIGCSMNHSIADGTSYWHFFNTLSEIFQAQGQGQEHDVPISHPPIHNRWFPEGLGPVINLPFKHHDEFICRHEAPKMRERIFRFTAESIAKLKAKANSESDTTKISSFQSLSALVWRSITRARCLSNDQITSCKMAINNRSRMEPPLPETYFGNSILAISAETTAGELLENNLGWAAWKVHLAVANHDDRVVRRSFKEWLQSPFMYRNDLFDPYSVMMGSSPRFNMYGNEFGMGKAVAVRSGYGNKFDAKVTSYPGHEGGGSIDLEVCLLPDTMSALESDKEFMSAVSVSNPLY* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01103 493 Gene3D - 266 478 IPR023213 -
Rops10g01103 493 Gene3D - 43 258 IPR023213 -
Rops10g01103 493 FunFam Tryptamine hydroxycinnamoyl transferase 262 480 - -
Rops10g01103 493 Pfam Transferase family 41 483 - -
Rops10g01103 493 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 43 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01103 Rops-Chr10 22858979 22860460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01103 103 477 Monolignol Biosynthesis Gene Families AT5G48930 29.471 1.25e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01103 - - gmx:100792511 685.641