Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01102 ATGATGAGTCCCCCTATAGTTCAGCGCGTTTCAGAATGTTTTATCAAGCCCCTGCTCCCCACTGATGAGTCAAACCAAATCTGTCATCTAACATCATGCGATATTGCTATGTTATCTATGCATTACATCCAGAAAGGCCTGCTATTCAAAAAGCCAACACCACTAGATAATCAACAAGATTTCATCGATAATCTGTTGGATAAGCTCAAACACTCCCTTTCCCTCACCCTCGTCCATTTCTATCCACTGGCTGGCCGCCTTGTCACCCACAAAACCCAATACCCTCCCTCTTATTCTGTTTTTGTTGATTGCAGAAACAGTCCTGGAGCTAGATTTATCTATGCAACTTTAGATTTGACCATATCTGACATCCTCTCCCCCGTTGATGTTCCACAGGTTGTTCAGTCATTATTTGACCTGGACAGAGCAGTCAACCATGACGGTCATACCATGCCTTTGTTGTCCATCCAAGTCACTCAACTAATGGATGGCGTTTTCATAGGTTGTTCCTTGAACCACAGTATTGGTGATGGTACTTCTTATTGGAAATTCTTCAATACATGGTCTGAGATCTTTCAAGCTCAAGGTGATGTTCCCATTTCACACCTACCCATTCACAATCGCTGGTTTCCAGAGGGTTGCGGTCCACCAATCAATCTTCCATTCAAACATCATGATGAGTTTATTAGCAGGTTTGAAGCACCAGAGCTGAGGGAGAGAGTATTCCATTTCACAGCAGAATCTATTGCGAAACTGAAAGCAAAGGCCAACTCAGAGTCCAATACCACCAAAATCTCTTCATTCCAATCCTTGTCAGCGCATGTTTGGAGATCCATCACTCATGCAAGACGCCTACCATATGATCAGAAAACCAAATGCATGTTAACTATAAATGATAGATCAAGGATTGAACCACCTCTTCCACAAGAGTACTTTGGAAACTCAATTGATTTGGTAAGTGCAGAGACAACGACAGGTGAATTGGTTGGGAATAATTTGGGATGGGCAGCATGGAAGCTGCATCTGGTTGTTGCAAACCATAACGACAGATTTGTGAGACAGAAGGTCAAAGACTGGTTACAATCTCCTGTTGTCAACCAACTTGGTCTACACTTTGATCCCTATAGTGTGACGATGTCAAGTTCACCGAGGTTCAACATGTATGGGAATGAATTTGGAATGGGAAAAGCAGTGGCAGTTCTGAGTGGGTATGCAAACAAATTTGATGGGAACGTGACATCATACCAAGGATATGAAGGAGGGGGGAGCATAGAATTGGCAGTGTCCCTTTCGCCTGATGCAATGAGTGCACTGGAATCAGACGAGGAGTTCATGAAGGCAGTTTCTGTGTCCAATCCGTTGTACTAG 1368 0.4349 MMSPPIVQRVSECFIKPLLPTDESNQICHLTSCDIAMLSMHYIQKGLLFKKPTPLDNQQDFIDNLLDKLKHSLSLTLVHFYPLAGRLVTHKTQYPPSYSVFVDCRNSPGARFIYATLDLTISDILSPVDVPQVVQSLFDLDRAVNHDGHTMPLLSIQVTQLMDGVFIGCSLNHSIGDGTSYWKFFNTWSEIFQAQGDVPISHLPIHNRWFPEGCGPPINLPFKHHDEFISRFEAPELRERVFHFTAESIAKLKAKANSESNTTKISSFQSLSAHVWRSITHARRLPYDQKTKCMLTINDRSRIEPPLPQEYFGNSIDLVSAETTTGELVGNNLGWAAWKLHLVVANHNDRFVRQKVKDWLQSPVVNQLGLHFDPYSVTMSSSPRFNMYGNEFGMGKAVAVLSGYANKFDGNVTSYQGYEGGGSIELAVSLSPDAMSALESDEEFMKAVSVSNPLY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01102 455 Gene3D - 226 440 IPR023213 -
Rops10g01102 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 445 - -
Rops10g01102 455 Gene3D - 9 214 IPR023213 -
Rops10g01102 455 FunFam Tryptamine hydroxycinnamoyl transferase 224 441 - -
Rops10g01102 455 Pfam Transferase family 11 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01102 Rops-Chr10 22852156 22854026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01102 27 439 Monolignol Biosynthesis Gene Families AT5G48930 27.842 1.22e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01102 - - lja:Lj1g3v1664450.1 729.939