Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01101 ATGAGTTTCCCTACCGTTCGACGCGTTTCCGAATGTTTTATCAAGCCGCTGCGTCCCATTGAAGAGTCAAACAAAATCTGTTATCTAACACCCGGCGATATTGGGATGTTAACTATGAATTACATCCAGGAGGGCCTGCTATTTAAAAAGCCAGCACCATCAGACAACCCACAAGATTTCATGGAGAATCTGTTGGAAAAGCTTAAACGCTCTCTTTCTCTTGCCCTCTTTCATTTCTATCCATTGGCTGGCCGTCTTGTCACCCACAAAACTCAAGACCCTCCCTCTTATTCTGTTTTTGTTGATTGCAGTAACAGTCCTGGAGCAGGATTTATCTATGCAACTTTAGATATGACCATATCCGACATCCTTTCCCCTGATATTATTCCACCGGTTGTTCATTCATTGTTTGATCTTGACAGAGCAATCAACCATGATGGTCACACCATGCCCTTGTTATCCATCCAAGTCACCGAACTAGCAGATGGTGTTTTTGTAGGTTGTTCCATGAATCACAGTATAGGTGATGGGACTTCTTATTGGAAGTTCTTTAATGCATGGTCTGAGATCTTTCAAGCTCAGGCTCAAGGGAATGAAGTTGATGTTCCCATTTCACACCCACCCATTCACAATCGCTGGTTTCCAGAAGGTTGGGGTCCATTGATCAATCTTCCCTTCAAACATCATGATGAGTTTATAAACAGATTTGAAGCACCAAAGCTGAGTGATAGAATCTTCCACTTTACAGCAGAATTTATTGCAAAACTGAAAGCAAAGGCCAACTCAGAGTCCAATACCACCGAGATCTCTTCATTCCAATCTTTAACAGCACATGTTTGGAGGTCCGTAACTCGCGCGCGCCGCCTACCACATGATCAGAAGACAAGTTGCATGTTAGCCATAAACAATAGAATAAGAATGGAACCGCCTCTGCCACCAGAGTACTTTGGAAACTCAATCAGTTTGGTGAGTGCATGGACGACGGCAGGGGAATTGCTTGAGAATAATCTGGGATGGGCAGCATGGAAGGTGCACCTGATTGTTGCAAACCACAACGACAGAGTGGTGCGACAGATGGCCCAAGAGTGGTTACAATCTCCTGTTGTCTACCAATTTGGTCCCGTCTTTGATCCCTATGGTGTGTCGATGTTAAATTCACATAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCGCTAGCAGTTCTGAGCGGGTCTGCATACAAATTTGAAGGGAGCGTGGATGTATACCCAGGATATGAAGGAGGGGGAAGCATAGATTTGGCAGTGTCCCTTTCACCTGATGCAATGAAGGCGCTGGAATCGGACGAGGAGTTCATGAAGACAGTTTCCATGCTCAATCCCTTGTGCTAG 1380 0.4478 MSFPTVRRVSECFIKPLRPIEESNKICYLTPGDIGMLTMNYIQEGLLFKKPAPSDNPQDFMENLLEKLKRSLSLALFHFYPLAGRLVTHKTQDPPSYSVFVDCSNSPGAGFIYATLDMTISDILSPDIIPPVVHSLFDLDRAINHDGHTMPLLSIQVTELADGVFVGCSMNHSIGDGTSYWKFFNAWSEIFQAQAQGNEVDVPISHPPIHNRWFPEGWGPLINLPFKHHDEFINRFEAPKLSDRIFHFTAEFIAKLKAKANSESNTTEISSFQSLTAHVWRSVTRARRLPHDQKTSCMLAINNRIRMEPPLPPEYFGNSISLVSAWTTAGELLENNLGWAAWKVHLIVANHNDRVVRQMAQEWLQSPVVYQFGPVFDPYGVSMLNSHRFNMYGNEFGMGKALAVLSGSAYKFEGSVDVYPGYEGGGSIDLAVSLSPDAMKALESDEEFMKTVSMLNPLC* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01101 459 Gene3D - 1 218 IPR023213 -
Rops10g01101 459 Pfam Transferase family 12 449 - -
Rops10g01101 459 FunFam Tryptamine hydroxycinnamoyl transferase 228 445 - -
Rops10g01101 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 449 - -
Rops10g01101 459 Gene3D - 228 444 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01101 Rops-Chr10 22836479 22837980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01101 17 443 Monolignol Biosynthesis Gene Families AT5G48930 28.829 2.02e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01101 - - lja:Lj1g3v1664450.1 674.47