Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01095 ATGGACATGATGACGATGATGATGATGCAACTCCCTGAGTTTTCTTCAGCTTACAGTGATGAATTTCCACCCATGGAGCAGTTTTGTGGCACTGCTAACAATATACGCAGCAGTACTATGCCACTTGCAGATTTAATTGATAACCCTCCTATGCCTTGGTCTTCATTCACACACTTACCGTCCAACACAATCTCCTTCACTAGTAACCCTAGCCCACTGTTTCGAGAACAAGAACAAACCCCACCAACGTCGTTGTCAAATTCGGGGGTAACGGGTGCAAACCCTTTTGCCACGGTGCCATCAGAGAAGCGAAACTCTATGGCGGCGATGAGGGAGATGATATTCAGGATGGCAGCCATGCAACCAATACACATAGACCCAGAATCAGTGAAGCCACCAAAGAGAAGGAACGTGAGGATTTCAAAGGATCCTCAGAGTGTGGCAGCTAGGCACAGGAGAGAAAGAATAAGCGAGAGGATAAGGATACTGCAGAGACTGGTACCTGGAGGAACTAAGATGGACACTGCTTCCATGTTAGATGAAGCCATTAATTACGTCAAGTTTTTGAAGACTCAGGTTCAGTCACTTGAACAAGCTGCTGCAAACAACAATACAGGGATAGGGTTCCCTGTTGCAATGTCTAGCAGGAATTCTGCAACTTCCATCCCTTATCTTCCTCTACCTAAACCTTACCAACCTCCAAATGTTTAG 711 0.4585 MDMMTMMMMQLPEFSSAYSDEFPPMEQFCGTANNIRSSTMPLADLIDNPPMPWSSFTHLPSNTISFTSNPSPLFREQEQTPPTSLSNSGVTGANPFATVPSEKRNSMAAMREMIFRMAAMQPIHIDPESVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAINYVKFLKTQVQSLEQAAANNNTGIGFPVAMSSRNSATSIPYLPLPKPYQPPNV* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01095 236 MobiDBLite consensus disorder prediction 70 99 - -
Rops10g01095 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Rops10g01095 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 55 216 IPR045843 GO:0003700|GO:0006355
Rops10g01095 236 Gene3D - 139 206 IPR036638 GO:0046983
Rops10g01095 236 SMART finulus 146 195 IPR011598 GO:0046983
Rops10g01095 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 201 IPR036638 GO:0046983
Rops10g01095 236 Coils Coil 179 199 - -
Rops10g01095 236 Pfam Helix-loop-helix DNA-binding domain 149 189 IPR011598 GO:0046983
Rops10g01095 236 FunFam BHLH transcription factor 143 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01095 Rops-Chr10 22705201 22705911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01095 61 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 67.532 1.03e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g01095 HLH 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01095 - - gmx:100815041 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01095 10 22705201 22705911 Rops10g01095 10 22705201 22705911 ECH