Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01089 ATGAACTTCAAAAGCTTTGTAAATGACGGCGATAACGGCGGCGGAGGGAGGCCGCCGGCGGGGAATTTTCCTCTGGCGAGGCAACCGTCGGTGTATTCATTGACTTTTGATGAGTTCATGTGTAGCATGGGAGGTTCAGGGAAGGATTTTGGGTCAATGAACATGGATGAGTTGTTGAAGAACATTTGGAGTGCTGAAGAGGTTCAAACAATGGGTGGTCACGAAGAGGGCAACGTTGGTGTTGGTAATTTGCAGAGACAAGGGTCTCTGACACTGCCGAGGACACTTAGTCAGAAGACAGTGGACGAAGTTTGGAAGGATATTTCCAAGGATTATGGTCCTAATGCTGCTGCGGCGGCTGCTGCGGCGGCAGCGCAGGCACAGAGACAGCCAACTTTGGGGGAGATGACGTTGGAGGAATTTTTGGTGAGAGCAGGTGTTGTAAGAGAAGATGCAAAGCCAAATGGTGGAGTCTTTGTTGATCTGTCTCGTGGGGGGAATAACAGTGCTTTAGGATTAGGGTTTCAGGCTCAGCAGTTGAACAAGGCTACAAATTTGATGGGTAACACCAATGGTGATCCACTTGTGGGTCTGCAATCCAATACCAATCTGCCTTTAAATGTTCATGGGGTTAGATCATCAAATCAGCAACAGATGCAGAGTTCACAATCCCATCAGCAGCAGCAGATATTTCCTAAGCAACCTGCTTTGAATTATGCAACTCAGATGCCTCTTACTAGTAATCAAGGAATCAGGGGTGGAATTGTGGGGCTTGGTGCTGATCAGGTTCTGAATGGTAATCTTGTACAAGGTGCTGCAGGGATTGGTATGGTTGGTTTGGCACCTGGGCCTGTTCATGTTGCTACTGGGTCACCAGCTAGTCAGATATCTAGTGATAAGATTGGAAAGAGCAATGGTGATACTTCTTCTGTGTCACCTGTTCCTTATGTCTTTAATGGTGGTCTTAGAGGGAGGAAGAATGGTGGACCCGTGGAGAAGGTAATTGAGAGGAGGCAGAGAAGAATGATAAAGAATAGAGAGTCAGCTGCTAGGTCGCGAGCTCGCAAGCAGGTGAAAGATTTTGACATGGGAAGTTGTAAAGATCCAGGTTATTACAAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCCAAGTTAAAAGAGGAGAACCAAGAACTACAGAAAAAGCAGGAAGAAATCATGGAAAGTCAGAAAAATCAAGTTAACGAAATGATGAATTTGCAACGAGAAGTCAAGAGAAAATGCTTAAGAAGAACACAAACTGGTCCATGGTAG 1296 0.4591 MNFKSFVNDGDNGGGGRPPAGNFPLARQPSVYSLTFDEFMCSMGGSGKDFGSMNMDELLKNIWSAEEVQTMGGHEEGNVGVGNLQRQGSLTLPRTLSQKTVDEVWKDISKDYGPNAAAAAAAAAAQAQRQPTLGEMTLEEFLVRAGVVREDAKPNGGVFVDLSRGGNNSALGLGFQAQQLNKATNLMGNTNGDPLVGLQSNTNLPLNVHGVRSSNQQQMQSSQSHQQQQIFPKQPALNYATQMPLTSNQGIRGGIVGLGADQVLNGNLVQGAAGIGMVGLAPGPVHVATGSPASQISSDKIGKSNGDTSSVSPVPYVFNGGLRGRKNGGPVEKVIERRQRRMIKNRESAARSRARKQVKDFDMGSCKDPGYYKAYTMELEAEVAKLKEENQELQKKQEEIMESQKNQVNEMMNLQREVKRKCLRRTQTGPW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01089 431 CDD bZIP_plant_BZIP46 337 407 - -
Rops10g01089 431 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 335 408 - -
Rops10g01089 431 Coils Coil 372 421 - -
Rops10g01089 431 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 340 355 IPR004827 GO:0003700|GO:0006355
Rops10g01089 431 SMART brlzneu 333 413 IPR004827 GO:0003700|GO:0006355
Rops10g01089 431 Gene3D - 335 408 - -
Rops10g01089 431 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 25 431 IPR043452 GO:0003700|GO:0045893
Rops10g01089 431 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01089 Rops-Chr10 22658840 22663557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01089 1 431 bZIP Transcription Factor Family AT4G34000 45.155 2.56e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops10g01089 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01089 K14432 - gmx:100819313 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01089 10 22658840 22663557 Rops10g01089 10 22658840 22663557 ECH