Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01074 ATGGTGGCGCCTTACGAGGAGAGTCGTCGCAAAAGAATGGAGGAAAACAAGAAGAGAATGGAGGCACTCAATCTCCCCCAGCTTTCTCAAGCCCTTCATAAGTCCCCTTCTCCCAAACCCTCTCCGCTGAAGCAAGTGAAATCTCGTACCATCGAGAAACAGCTAGTTGTGGTAAGAAGGTCCAGCCGTGTCGCCAACATGCCCGCTCCTGTTTACAAAGAAGTGACTATTGATCGCGTGGCAATACCTAGAAGGTTAAGAGCTTACAATAAACATAGGGATTATTCGAATCGGGTATATGCTTCAGATGAAGCCAGAGAGGAGGCATTAGAGAAAGCAGACAAGTTACTTTCAGATTTAGAATCTGAATATCCAACCTTTATAAAGACAATGCTCCAATCCCATGTCAGTGGTGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGCAAAACCTTCCAAAACAGGATGAAGTGATTACTTTGATTGATGAGGATGGGGATGAGTTTCCAACAATATATTTGCCTCGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGCTCATAATCTAGCTGATGGGGACGCTTTAATTTTTCAATTAGTCAAACGCACTGCATTCAAGGTGTACATTATTAGAGTGAATGGTCCTTCAGAGAGCAAATAG 675 0.4415 MVAPYEESRRKRMEENKKRMEALNLPQLSQALHKSPSPKPSPLKQVKSRTIEKQLVVVRRSSRVANMPAPVYKEVTIDRVAIPRRLRAYNKHRDYSNRVYASDEAREEALEKADKLLSDLESEYPTFIKTMLQSHVSGGFWLGLPVHFCKQNLPKQDEVITLIDEDGDEFPTIYLPRKTGLSGGWKGFAVAHNLADGDALIFQLVKRTAFKVYIIRVNGPSESK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01074 224 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g01074 224 Gene3D - 101 219 IPR015300 -
Rops10g01074 224 MobiDBLite consensus disorder prediction 28 46 - -
Rops10g01074 224 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677
Rops10g01074 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 218 IPR044837 -
Rops10g01074 224 CDD B3_DNA 125 216 IPR003340 GO:0003677
Rops10g01074 224 SMART B3_2 127 218 IPR003340 GO:0003677
Rops10g01074 224 MobiDBLite consensus disorder prediction 1 46 - -
Rops10g01074 224 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Rops10g01074 224 Pfam B3 DNA binding domain 127 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01074 Rops-Chr10 22533418 22537166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01074 49 223 B3 DNA Binding Superfamily AT5G42700 63.068 3.60e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops10g01074 B3 9.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01074 - - gmx:100797091 354.369