Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01058 ATGCAGGCCTCGGGCTGCTTCTTCCTTGTACTCTCCATTTTCCTCTTATCATCATCATCCTTCTCTTATGCACTTTCTGATGCTGAAGCCTCTCTCATTGCTCGTCGACAATTGACACACCTTCACGAGAATGATGATTTACCCGACAACTATGCAGACAACTATAAGACAGATTTAACTTTCGCTAATCCTAGACTCAAGCGCGCTTATATTGCGCTTGAAGCATGGAAAAAGGCGATGTATTCCGACCCATCAAATTTCACAGCGAATTGGGTGGATGCAGATGTTTGTTCTTACAATGGTGTTTTCTGTGCACCTGCTTTGGATGACTCAAAGATCGAAGTTGTGGCTGGGATTGATCTTAACCATGCAGATATCGCTGGTTACATCCCTCCTGAAATCGGTTTGTTGACTGATCTTGCTCTTTTGCATATAAACTCTAACAGGTTTTGTGGGGTTCTCCCAAAAAGCTTCTCCAAGCTAAAGCTTATGTATGAGCTTGATATCAGCAACAACCGTTTCGTTGGTCCATTCCCCGAACCCGTTCTTTCACTCCCAGATATCAAATACCTTGATATCAGGTTCAATGACTTCGAAGGGGCATTGCCTTCTGAGCTTTTCAACATGAAACTTGATGCTATCTTTTTGAATAACAACCGTTTCACATCCACGATTCCAGAGAATCTGGGATCCTCTCCAGCTACGGTTGTCGTTATGGCCAATAACCATTTGAGTGGCTGCATTCCATCAAGCGTTGGTGATATGAAAAAGACCTTGACTGAGTTTGTTTTACTCAACAACAACCTCACTGGTTGCCTGCCCGCAGAAATTGGAAAGCTTAAACAAGTTTCTATCTTTGATGTGAGCCAGAACTTGTTAGTTGGCGAGTTGCCCAGGGCCTTCAAGGGACTCAAAAGCGTGGAAGTGTTATCCATTGCAAACAACACGATGACAGGTTTTGTCCCACGTAGCATCTGTAGCTTGCCCAGCTTGGTAAACTTCACATTCTCGTATAACTACTTCAATGGTGAGGAAGAAGGTTGTGTGCCTCCTGGAAAGAACATTGCGTTAGATGATACGAGCAACTGTATACCAGATAGGCCAAAACAGAAGCCAGCAAACACATGCAATGCTGTCTTAAGCAAGCCTGTTGATTGCAGCAAGGCACAATGTGGCCACTCATCTCACTCCAATCCTCCTTCAGAGAAGCCAAAACCATCTTTACCAAAGCCAACACCTTCTCCTTCCAATCCTTCAACCGAGAAGCCTACACCTTCTGCACCATCTGTACCAAAACCTAGCCCTTCTCCTTCCAATCCTCCAACCCAGAATCCTACACCTTCGGCACCAAAGCCAAAGCCTACTCCACCATCAGAACCGAAACCTAACCCTCCTCCTTCCAATCCTCCAACTGAGAAGCCAACACCAACACCATCAGAACCGAAACGTAACCCTCCTCCTTCCAATCCTCCAACTGATAAGCCAACACCAACACCATCTGCACCTAAACCCAACCCTTCTCCTTCCAATCCTCCAACACAAAAGCCTACACCATCGGTACCAAAGCCACAGCCCCAACCTACCCCTTCCAATCCTCCAACACAAAAGCCTACACCATCAGTACCAAAGCCACAACCCCAACCTACCCCTCCTCCCTCCAATCCTCCAACCCAGAAGCCACCAGAAGCAGAACCACCATCAGATGATCCTCACAGGGAAGCACCCCGCCGACGAACTAGGCCTCCACACTCTCCACCTCCACAAACTGTTAACCACTCCTCACCACCCCCACCCGTTCAATCCCCACCACCACCTGTCTATTCTCCACCACCTCCGGTTCACTCACCTCCACCCCCACCAGTGGTTCATTCTCCTCCACCTCCTGTCCACTCTCCACCACCACCACCACCGGTTGTTCATTCTCCTCCTCCACCGGTTCACTCTCCACCACCCCCACCAGTGGTTCATTCTCCTCCTCCACCAGTGCACTCTCCTCCACCACCTGTCTATTCTCCTCCTCCGCCAGTTCACTCTCCACCACCCCCACCAGTGGTTCATTCTCCTCCTCCACCAGTTCACTCCCCACCACCCCCACCAGTGGTTCACTCTCCTCCTCCACCAGTGCACTCTCCACCACCTCCACCGGTGGTTCATTCTCCTCCACCTCCTGTTCACTCTCCACCACCCCCACCGGTGGTTCACTCTCCTCCACCACCTGTCCATTCTCCACCACCACCGGTTCAGTCTCCTCCTCCGCCAGTGCACTCTCCACCTCCACCGGTTCATTCTCCTCCACCACCGGTGCACTCTCCTCCTCCACCGGTTCATTCTCCTCCACCACCGGTGCACTCTCCTCCTCCACCGGTTCATTCTCCTCCACCACCGGTGCACTCCCCTCCTCCACCGGTCCATTCTCCACCTCCACCAGTTCACTCCCCTCCACCACCGGTACACTCCCCTCCACCACCGGTACACTCCCCTCCTCCACCGGTCCATTCTCCACCTCCACCAGTTCACTCCCCTCCACCACCGGTGCACTCCCCTCCTCCACCGGTGCACTCCCCTCCTCCACCAGTTCACTCCCCACCACCACCCGTTCACTCTCCTCCTCCACCAGTTTATTCCCCACCACCACCAGTCCATTCCCCACCGCCACCAGTTTCCTCACCCCCTCCTCCAGAAGAAGATATCATTCTTCCCCCTCACTTTGGCTCTTCATATTCTTCGCCCCCTCCACCAGTCATTCAAGGCTACTAA 2757 0.5165 MQASGCFFLVLSIFLLSSSSFSYALSDAEASLIARRQLTHLHENDDLPDNYADNYKTDLTFANPRLKRAYIALEAWKKAMYSDPSNFTANWVDADVCSYNGVFCAPALDDSKIEVVAGIDLNHADIAGYIPPEIGLLTDLALLHINSNRFCGVLPKSFSKLKLMYELDISNNRFVGPFPEPVLSLPDIKYLDIRFNDFEGALPSELFNMKLDAIFLNNNRFTSTIPENLGSSPATVVVMANNHLSGCIPSSVGDMKKTLTEFVLLNNNLTGCLPAEIGKLKQVSIFDVSQNLLVGELPRAFKGLKSVEVLSIANNTMTGFVPRSICSLPSLVNFTFSYNYFNGEEEGCVPPGKNIALDDTSNCIPDRPKQKPANTCNAVLSKPVDCSKAQCGHSSHSNPPSEKPKPSLPKPTPSPSNPSTEKPTPSAPSVPKPSPSPSNPPTQNPTPSAPKPKPTPPSEPKPNPPPSNPPTEKPTPTPSEPKRNPPPSNPPTDKPTPTPSAPKPNPSPSNPPTQKPTPSVPKPQPQPTPSNPPTQKPTPSVPKPQPQPTPPPSNPPTQKPPEAEPPSDDPHREAPRRRTRPPHSPPPQTVNHSSPPPPVQSPPPPVYSPPPPVHSPPPPPVVHSPPPPVHSPPPPPPVVHSPPPPVHSPPPPPVVHSPPPPVHSPPPPVYSPPPPVHSPPPPPVVHSPPPPVHSPPPPPVVHSPPPPVHSPPPPPVVHSPPPPVHSPPPPPVVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVSSPPPPEEDIILPPHFGSSYSSPPPPVIQGY* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01058 918 MobiDBLite consensus disorder prediction 581 898 - -
Rops10g01058 918 MobiDBLite consensus disorder prediction 564 580 - -
Rops10g01058 918 MobiDBLite consensus disorder prediction 387 918 - -
Rops10g01058 918 SUPERFAMILY L domain-like 77 349 - -
Rops10g01058 918 MobiDBLite consensus disorder prediction 402 563 - -
Rops10g01058 918 PRINTS Proline rich extensin signature 418 434 - -
Rops10g01058 918 PRINTS Proline rich extensin signature 456 481 - -
Rops10g01058 918 PRINTS Proline rich extensin signature 395 416 - -
Rops10g01058 918 PRINTS Proline rich extensin signature 437 454 - -
Rops10g01058 918 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Rops10g01058 918 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 530 - -
Rops10g01058 918 Pfam Leucine rich repeat 286 339 IPR001611 GO:0005515
Rops10g01058 918 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Rops10g01058 918 Gene3D Ribonuclease Inhibitor 69 354 IPR032675 -
Rops10g01058 918 FunFam Leucine-rich repeat receptor protein kinase EMS1 232 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01058 Rops-Chr10 22312449 22315511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01058 5 581 Trihelix Transcription Factor Family AT3G19020 51.901 1.10e-179 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01058 - - gmx:100780677 623.624