LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01057	ATGGCGTTACGTGTGACCTTCTCCTTTTCTGGCTATGTCGCCCAGAACCTCGCCTCCTCCGCCGGGGTTCGAGTCGCGAATTCTCGTTGCGTCCAAGAGTGTTGGATCCTCTCGCGCTTCTTTGGAACTAACCAGAAACCCGATCTCGATCCCACCGGCGGAGTAAGGAATTTCTATTCCGATCACAGAAGGCCCAAATCGAATTGCTGGGTCAGAAACTCTGTTTCTTCCTCTGCCTATTCTACCCTCGCCGGAGAGGTTCTCGGTGAAAATTGTAACAACCCCATAATCTTGGGTTTGATTTCGATGATGAAGTCAACGGTTGGTGTTTCTGGGTCATCGACGGCGGCTATGGGTATTTTGGGTATTTCGCCCTTTAAGACCTCTTCGATTATACCCTTTTTGCCGGGTTCGAAGTGGCTTCCTTGTAATGAGTCTGTTCCTGATACCACAATCTGGGAAGTTGATAAAGGTGGAACGAGATGTATTGATAGAGGTGTCGCGAATGCAGAATCGGATTTTGAGAAGACTGGTTGGCTTTCGAGGTTGTTGAATGTTTGTTCCGAAGATGCTAAGGCTGCTTTCACTGCTGTCACTGTTAGTTTACTCTTCAAATCCTTCTTGGCTGAACCTAAATCCATTCCCTCTTCTTCTATGTACCCAACTCTTGAAGTTGGTGACCGTGTTCTGACTGAAAAGCTTTCTTACTTCTTCAGAAAGCCTGATGTTTCAGATATAGTGATTTTTAAAGCGCCTCCTATTTTGCAGGAATTTGGTTTTACTTCATCTGATGTATTTATAAAAAGGGTTGTGGCTAAGGCTGGTGATTTTGTTGAGGTTCGTGGTGGGAAACTACTGGTGAATGGTGTTGCTGAAGAAGAGGAATTCGTTTTAGAGCCTCTTGCTTATAAGATGGAGCCAATGGTTGTGCCAGAAGGACATGTTTTTGTGATGGGAGACAATCGTAACAAGAGCTTTGATTCTCATAACTGGGGTCCACTTCCTATTGAGAACATTGTCGGTAGATCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCAGACACTGACACCCTTCATAGACCCACACCTGGAAACAAATCTGTGGCAATTTCTTGA	1119	0.454	MALRVTFSFSGYVAQNLASSAGVRVANSRCVQECWILSRFFGTNQKPDLDPTGGVRNFYSDHRRPKSNCWVRNSVSSSAYSTLAGEVLGENCNNPIILGLISMMKSTVGVSGSSTAAMGILGISPFKTSSIIPFLPGSKWLPCNESVPDTTIWEVDKGGTRCIDRGVANAESDFEKTGWLSRLLNVCSEDAKAAFTAVTVSLLFKSFLAEPKSIPSSSMYPTLEVGDRVLTEKLSYFFRKPDVSDIVIFKAPPILQEFGFTSSDVFIKRVVAKAGDFVEVRGGKLLVNGVAEEEEFVLEPLAYKMEPMVVPEGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKVSDTDTLHRPTPGNKSVAIS*	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01057	372	Gene3D	Umud Fragment, subunit A	204	361	-	-
	Rops10g01057	372	ProSitePatterns	Signal peptidases I serine active site.	216	223	IPR019756	GO:0004252\|GO:0016020
	Rops10g01057	372	ProSitePatterns	Signal peptidases I signature 3.	315	328	IPR019758	GO:0004252\|GO:0016020
	Rops10g01057	372	CDD	S26_SPase_I	210	342	IPR019533	GO:0004252\|GO:0006465
	Rops10g01057	372	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	207	223	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops10g01057	372	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	266	278	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops10g01057	372	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	310	329	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops10g01057	372	NCBIfam	signal peptidase I	194	349	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops10g01057	372	FunFam	Peptidase/ serine-type peptidase	216	347	-	-
	Rops10g01057	372	SUPERFAMILY	LexA/Signal peptidase	206	353	IPR036286	-
	Rops10g01057	372	PANTHER	SIGNAL PEPTIDASE I	176	355	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Rops10g01057	372	Pfam	Signal peptidase, peptidase S26	191	348	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01057	Rops-Chr10	22275461	22277938	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01057	219	349	MADS-box Gene Family	AT1G29960	32.576	1.74e-13	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01057	K03100		-	gmx:100817525	583.563

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g01057	10	22275461	22277938	Rops10g01057	10	22275461	22277938	ECH