Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01050 ATGACTCCTTCTAACAAATCTTTCTCTCCTTCACCTTCACCTTCACCTTCACCTTCACCTACGATAGAAGGCAAGGGACAAGAACAGGGACAGAAACAATCGCTTCAACAACGGAGGCTTACGAGACAGAGGAGGTTAAGGTACCTGAGCGACCAAGACGCTGGTTTCCATTCAACAGAAAACGCATCTTCCTCTTCTTTACCGAATTCTCCTCTTCACTGGTCTTCCTCTGCTGTCCCTCAACCTCTTCCTCTTCCTGAATCTTCCTTCACTCGCCGACCCTCCCATCCCTCTCCTTTTTCCAGAAAGACTGTGGATGAGAGAAGTTTGAGATCTTCAAGCAATTTGAGTAGACCATCTTTTGATCAAGTGAATGCAAATGCAAGATATGATTTGAGGGTGAATATTCCACCTGCAAGAGTCTTGGCAGGCAATAATAGCTTAAGTAAAGATCCAAGAGAACTCTCTCATGATAATGACCCTGAAAGTATTTCCAACTTGAAATTGCATTTTTCAGCCAAGAGTGCCCCAACAAGCATGTTCTCCAGTCCTGTTACTAGTCCACGTAGATCAAGGAAAGTAGATTTGTTTGATCCTTCCATCAATTTTCAACAAGATTTTAATGACATTTTGAAAGTGTTACCATCTAAAACTGTTCATAGTCCAGGGTGTCACAGTCCTTGCCTCAATCCTAATATTCAAGAGGGAACTCAACACCATAAATTTTCCCCCAGAGTATGGCCTGAAAGTAACCATGTCGATGCACATCCATTGCCCCTTCCTCCTAGAGCTTCACCAACATCACAATCATCTACACCACATCAATCAAGTATCATTCATCACGCCACAGAAAATTCACATCAATCAAGTATCATGCATCACGCCGCAGAAAATTCACCTTCAATGAAATGGCAGAAAGGAAAACTTATTGGACGTGGATCATATGGAAGTGTATATCATGCAACCAACCTAGAGACTGGAGCCTCATGTGCAATGAAAGAGGTGGATCTGTTTCTTGATGATCCTAAATCTTCCGAACGCATAAAGCAACTAGAGCAGGAAATCAGAATTCTCCGTCAACTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAGTTGATGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAGTTTATGCATGAACATTGTGGGGCTATGACAGAATCGGTGGTCCGCAATTTTACATGGCATATTCTATCTGGATTGGCATACTTACATGGTACCAAGACTATCCACAGGGATATCAAAGGCGCAAACTTGCTAGTTGATGCATCAGGCATTGTCAAGCTAGCAGATTTTGGGGTGTCAAAAATTCTAACAGAGAAATCATATGAACTTTCATTGAAGGGCAGTCCCTACTGGATGGCTCCAGAGCTCATGAAAGCTGTCATAAAGAATGAATCGAGTCCTGAAATTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACCATCATCGAAATGCTGACAGGAAAACCTCCTTGGGGTGACTTTAAAGGGCCTCAAGCTATGTTCAAGGTACTATACAAATCCCCAGATATACCCGAAACTTTATCTTCAGAGGGACAGGATTTCCTTCAGCAGTGTTTCATAAGGAACCCTGCAGATCGACCATCAGCAGTAATGCTCCTGACACACGCCTTTGTACACAATTTGCATGATCAAGATGTTCCAATTCATTCACAAGGTTATCCTAGAGGAGACCCTGGACCAAGAGATGATTCACGGAGACATAGTCCCAAACACTGTTCAAAAAATAGCCGTGGTGTAGTGCCAGCCTCCATTCCCACACGGATTTTTAACAAAATTCATAATTTAATCGGTGACACTTCAAAAAGATATGATACTGAGGAATCTAATCATGCTACATCTTCTCGTGACTCTCCTTGCTCTATGTCACAAGTTAACAGTCCTCAATCTCCCTTGAAATCTAGGTTCCTCAATTACATGGCTGTTACCAATCCCAGCAACATACCCTTTGTTATGAGAATCATCAAGGCACCTTTGAAGCATGTTATCAGCTGA 2073 0.4235 MTPSNKSFSPSPSPSPSPSPTIEGKGQEQGQKQSLQQRRLTRQRRLRYLSDQDAGFHSTENASSSSLPNSPLHWSSSAVPQPLPLPESSFTRRPSHPSPFSRKTVDERSLRSSSNLSRPSFDQVNANARYDLRVNIPPARVLAGNNSLSKDPRELSHDNDPESISNLKLHFSAKSAPTSMFSSPVTSPRRSRKVDLFDPSINFQQDFNDILKVLPSKTVHSPGCHSPCLNPNIQEGTQHHKFSPRVWPESNHVDAHPLPLPPRASPTSQSSTPHQSSIIHHATENSHQSSIMHHAAENSPSMKWQKGKLIGRGSYGSVYHATNLETGASCAMKEVDLFLDDPKSSERIKQLEQEIRILRQLHHPNIVQYYGSEIVDDRLYIYMEYVHPGSLHKFMHEHCGAMTESVVRNFTWHILSGLAYLHGTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAVIKNESSPEIAMAIDIWSLGCTIIEMLTGKPPWGDFKGPQAMFKVLYKSPDIPETLSSEGQDFLQQCFIRNPADRPSAVMLLTHAFVHNLHDQDVPIHSQGYPRGDPGPRDDSRRHSPKHCSKNSRGVVPASIPTRIFNKIHNLIGDTSKRYDTEESNHATSSRDSPCSMSQVNSPQSPLKSRFLNYMAVTNPSNIPFVMRIIKAPLKHVIS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01050 690 MobiDBLite consensus disorder prediction 627 655 - -
Rops10g01050 690 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 27 578 - -
Rops10g01050 690 MobiDBLite consensus disorder prediction 639 655 - -
Rops10g01050 690 MobiDBLite consensus disorder prediction 20 37 - -
Rops10g01050 690 Pfam Protein kinase domain 305 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01050 690 MobiDBLite consensus disorder prediction 573 606 - -
Rops10g01050 690 ProSitePatterns Protein kinases ATP-binding region signature. 310 333 IPR017441 GO:0005524
Rops10g01050 690 ProSiteProfiles Protein kinase domain profile. 304 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01050 690 MobiDBLite consensus disorder prediction 1 122 - -
Rops10g01050 690 MobiDBLite consensus disorder prediction 240 277 - -
Rops10g01050 690 Gene3D Transferase(Phosphotransferase) domain 1 301 583 - -
Rops10g01050 690 SMART serkin_6 304 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01050 690 FunFam Mitogen-activated protein kinase kinase kinase 5 301 603 - -
Rops10g01050 690 SUPERFAMILY Protein kinase-like (PK-like) 303 615 IPR011009 -
Rops10g01050 690 MobiDBLite consensus disorder prediction 54 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01050 Rops-Chr10 22198968 22203987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01050 253 567 MAP Kinase Kinase Kinase AT5G66850 63.492 7.64e-140 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops10g01050 Pkinase 6.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01050 - - gmx:100781764 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01050 10 22198968 22203987 Rops10g01050 10 22198968 22203987 ECH