Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01047 ATGGAAGCAATGAATAGAAGCTCCTCTTCCACTACCTCTTCCTCAGACTCTTACTCTTCAGAGTCAAATCCAAGGAATAGCAACAAACCTGAAAGGATTAAAGGTCCGTGGAGTGCTGAAGAAGACAGGATTTTGACCCGACTCGTGGAGCAACACGGGCCAAGAAACTGGTCCCTCATAAGTCGTTACATAAAGGGGAGGTCCGGCAAGTCTTGCAGGCTACGGTGGTGTAACCAGCTGAGCCCCGCCGTGGAGCACCGTCCGTTCTCCGCACAAGAGGATGAGATCATCATAGCTGCACATGCCCAGTACGGTAACCGGTGGGCCACCATTGCCCGGTTACTACCGGGTCGAACCGATAATGCTGTTAAGAACCATTGGAACTCCACCCTCAAGCGCAGGGCCAATGGTGGTGGTGGTTCTCTTGTTTTAGCTTCTACCAACGAGGGGGCTAGTTCTTCGGGTGCTACTCGACCTTGCATGCCGCTGGAGGATGACCCGTTGACCGCGTTGACTCTGGCTCCGCCGGGGATTGGTAACGGTGCCGTGGCTGAACACCCTCAACACTCGCCGGAGAATGTGCCGTCGGGGTTTTGGGATGTGATGAGGGATGTCGTTGCGAGGGAAGTTAGGGAATATGTTGCTTCAAATTTTTCTCATAACTCAGGTTTTCATTGA 678 0.5295 MEAMNRSSSSTTSSSDSYSSESNPRNSNKPERIKGPWSAEEDRILTRLVEQHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDEIIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRANGGGGSLVLASTNEGASSSGATRPCMPLEDDPLTALTLAPPGIGNGAVAEHPQHSPENVPSGFWDVMRDVVAREVREYVASNFSHNSGFH* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01047 225 Gene3D - 33 85 - -
Rops10g01047 225 MobiDBLite consensus disorder prediction 1 37 - -
Rops10g01047 225 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Rops10g01047 225 FunFam MYB transcription factor 34 85 - -
Rops10g01047 225 PANTHER MYB PROTEIN-RELATED 34 176 - -
Rops10g01047 225 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Rops10g01047 225 SMART sant 33 82 IPR001005 -
Rops10g01047 225 SMART sant 85 133 IPR001005 -
Rops10g01047 225 Pfam Myb-like DNA-binding domain 37 95 - -
Rops10g01047 225 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Rops10g01047 225 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g01047 225 CDD SANT 88 131 IPR001005 -
Rops10g01047 225 Gene3D - 87 153 - -
Rops10g01047 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Rops10g01047 225 CDD SANT 36 78 IPR001005 -
Rops10g01047 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01047 Rops-Chr10 22164390 22165381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01047 31 149 MYB Transcription Factor Family AT3G50060 70.588 1.58e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g01047 Myb_DNA-bind_6 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01047 - - gmx:778051 327.02