Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01041 ATGCAATCATCAAATGGCTCTGATTCGCAACAACTAACGGAACAGAATCAGCAACGGCAACAACAAACAACGCCGCCGCCGCCACAACCACTGGCACTGCCGCAGCAACAGTGGGTGCCGATGCAATACCCAACGGCGGCCATGGTAATGCAGCATCACATGTTGCCGCCTCAACATTACGCGCCGCCACCACCACAGTCATACATGCCTTACCACCAGTACCAACAGCACGTGCCGCACGTGCCGCAAGGATCCAGCGCTGAGAACAAGACGATCTGGGTTGGCGATTTGCATCATTGGATGGATGAGAATTATCTCCACCGTTGTTTCGCTTCCACCGGCGAGATTTCTTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTGTCAGAGGGTTATGGATTTGTGGAATTTTATTCACATGGCACAGCTGAGAAGGTTTTACAAAATTATGCTGGGATTTTGATGCCTAACACAGATCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTCGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAACGAGAGGTCTCAGGCTATGACTGAAATGAATGGCGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGTCATCTGGTTATCAACAAGGTGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGCTGAAGATCTTAGGCAACCATTCTCCCAGTACGGTGAAATAGTCTCTGTTAAGATACCTGCTGGGAAAGGATGTGGGTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAATGATTGGCAACCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAATCCCTGGAGTGGGGCATATTATGGGGGCCCTGTTTATGATGGTTATGGATATGCTTTGCCACCACCTCATGATCCAAGCATATATGCTGCTGCTTATGGAGCTTACCCCGTTTATGGAGGACACCAACAACAAGGGCTAATTGATGTGATAACAGCTGGACTCAGGACAAGTTCCTTTGCCCAACACGTTTCAATGGCCCAGTTTTGTGTCTCTTCCTCTCTCTCTTTTGCACCTTCTCCTCCTCTTCAACTTCACCGGCGAATCTTTCTCCGTTCTCAACGAACCGTTTCGTCCGCTTCTTCCTCTGTTACGGATTCCGTCTCCACTTTCACTTCTGCTTCCACTTCGAATCTCACGCCCAAAGTTGTCGTCACCAGAGAACGTGGCAAAAACGCCAAGCTTATCGCTGCTCTGGCCAAACATGAAATCAATTGTTTGGAGCTTCCACTCATTGAGCACACGCAGGGACCTGATTTAGACAGGCTTCCTTCTGTGTTAAGTGATAATGCATTTGATTGGGTTGTCATAACTTCCCCCGAGGCTGGTTCAGTCTTTCTAGAGGCATGGAGAGCTGCTGGGATGCCTCGTGTCAAAATAGGCGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCAATCAATTGATATTGCCTTTGCACCATCAAAAGCAACGGGAAAGGTTTTGGCTGAAGAGCTTCCCAAATTTGGAAATAAATCCACTGTTCTATATCCTGCTTCTGCAAAGGCTAGCAATGACATTGGGGAAGGGCTTTCAAATCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTACCAGTTCAACATGTTGACATTATGGTTCTAAAGCAAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCGTCTGCAATTCATGCCTGGAAGAATCTTATTTCAGATTCAGAGTGGAACAATTCTGTTGCATGCATTGGTGAGACAACTGCTGCAATGGCAAGAAGATTAGGCTTCAGAAATGTGTACTACCCGACACAACCAGGCCTTGACGGCTGGGTAGAAAGCATTCTTGAAGCATTAGGATCCTATGATGAATTATTGAGTTGTTTGTTGGTTTCCTTCAAACTGCATTTTGCTAAGTGTTGCTCACAGCTCACAATGGGTCTTGAAGATGGTGGCGACAGCAGTGACGGAGGAGATGAGATGAAGGCGGCAGGAGGAGTCGAGACGGAGGAGAACTTGGACTATGCTTATAAAAAAAAGAAAGAAGAATATTGTGTGAGGGCAAAAATGATATTTCCATTATAA 2427 0.4569 MQSSNGSDSQQLTEQNQQRQQQTTPPPPQPLALPQQQWVPMQYPTAAMVMQHHMLPPQHYAPPPPQSYMPYHQYQQHVPHVPQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPAGKGCGFVQFANRNNAEEALQKLNGTMIGNQTVRLSWGRNPANKQFRMDFGNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPVYGGHQQQGLIDVITAGLRTSSFAQHVSMAQFCVSSSLSFAPSPPLQLHRRIFLRSQRTVSSASSSVTDSVSTFTSASTSNLTPKVVVTRERGKNAKLIAALAKHEINCLELPLIEHTQGPDLDRLPSVLSDNAFDWVVITSPEAGSVFLEAWRAAGMPRVKIGVVGAGTASIFKEALQSSNQSIDIAFAPSKATGKVLAEELPKFGNKSTVLYPASAKASNDIGEGLSNRGFEVTRMNTYTTVPVQHVDIMVLKQALAAPVVTVASPSAIHAWKNLISDSEWNNSVACIGETTAAMARRLGFRNVYYPTQPGLDGWVESILEALGSYDELLSCLLVSFKLHFAKCCSQLTMGLEDGGDSSDGGDEMKAAGGVETEENLDYAYKKKKEEYCVRAKMIFPL* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01041 808 CDD HemD 494 729 IPR003754 GO:0004852|GO:0033014
Rops10g01041 808 MobiDBLite consensus disorder prediction 263 290 - -
Rops10g01041 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 158 IPR000504 GO:0003723
Rops10g01041 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 353 IPR000504 GO:0003723
Rops10g01041 808 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Rops10g01041 808 MobiDBLite consensus disorder prediction 1 34 - -
Rops10g01041 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Rops10g01041 808 SMART rrm1_1 184 258 IPR000504 GO:0003723
Rops10g01041 808 SMART rrm1_1 91 166 IPR000504 GO:0003723
Rops10g01041 808 SMART rrm1_1 289 356 IPR000504 GO:0003723
Rops10g01041 808 Pfam Uroporphyrinogen-III synthase HemD 506 727 IPR003754 GO:0004852|GO:0033014
Rops10g01041 808 SUPERFAMILY HemD-like 493 734 IPR036108 GO:0004852|GO:0033014
Rops10g01041 808 PANTHER UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC 437 735 IPR039793 GO:0004852|GO:0006780
Rops10g01041 808 CDD RRM2_SECp43_like 182 261 - -
Rops10g01041 808 CDD RRM1_SECp43_like 91 171 - -
Rops10g01041 808 Gene3D - 171 276 IPR012677 -
Rops10g01041 808 SUPERFAMILY RNA-binding domain, RBD 182 360 IPR035979 GO:0003676
Rops10g01041 808 Gene3D - 644 733 IPR036108 GO:0004852|GO:0033014
Rops10g01041 808 SUPERFAMILY RNA-binding domain, RBD 52 173 IPR035979 GO:0003676
Rops10g01041 808 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g01041 808 Gene3D - 89 169 IPR012677 -
Rops10g01041 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Rops10g01041 808 FunFam Polyadenylate-binding protein RBP47 273 390 - -
Rops10g01041 808 Gene3D - 537 643 IPR036108 GO:0004852|GO:0033014
Rops10g01041 808 FunFam Uroporphyrinogen-III synthase, chloroplastic 537 643 - -
Rops10g01041 808 CDD RRM3_NGR1_NAM8_like 287 358 - -
Rops10g01041 808 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Rops10g01041 808 MobiDBLite consensus disorder prediction 259 290 - -
Rops10g01041 808 FunFam Polyadenylate-binding protein RBP47C isoform A 89 169 - -
Rops10g01041 808 FunFam Polyadenylate-binding protein RBP47C isoform A 182 258 - -
Rops10g01041 808 Gene3D - 277 390 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01041 Rops-Chr10 22084109 22108286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01041 92 368 Eukaryotic Initiation Factors Gene Family AT4G34110 27.660 4.62e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01041 - - gmx:100777830 693.73