Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01039 ATGGAACCGCCTCTTCCACAAGAGTACTTTGGAAACTCTATTCAAACAGTTAGTGCAGAAACAATTGCAGGGGAATTGCTTGAGAATGATCTGGGATGGGCAGCATGGAAGGTGCACCTGGTTGTTGCTAACCATAACGACAGAGTGGTGCCCCAGACGCTGAAAGAACGGTCACATTCTCCGTTCATCAATCAAATTGATATGTTCTGTGACCCATATAGTGTGCTGATGGGTAGTTCACCCAGCTTCAACATGTATGGTAATGAATTTGGAATGGGAAAAGCAGTGGCAATTAAAAGTGGGTATGGCAACAAATTTGATGGAAAAGTGTCATCATTCCCAGGCAATGAAGGAGGGGGAAGCATAGGTTTGGAAGTGTGTCTTTCGCCACATACAATGAGCGCACTGGAATCAGACAAGGAATTCATGAATGCAGTTTCAGTGTCCAGTCCCATCTACTAG 462 0.4481 MEPPLPQEYFGNSIQTVSAETIAGELLENDLGWAAWKVHLVVANHNDRVVPQTLKERSHSPFINQIDMFCDPYSVLMGSSPSFNMYGNEFGMGKAVAIKSGYGNKFDGKVSSFPGNEGGGSIGLEVCLSPHTMSALESDKEFMNAVSVSSPIY* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01039 153 Pfam Transferase family 1 143 - -
Rops10g01039 153 Gene3D - 1 143 IPR023213 -
Rops10g01039 153 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01039 Rops-Chr10 22024689 22025150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01039 1 137 Monolignol Biosynthesis Gene Families AT5G48930 24.286 2.99e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01039 - - gsj:114420942 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01039 10 22024689 22025150 Rops10g01039 10 22024689 22025150 ECH