Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01038 ATGAGTTCCCCTGCCGTTCGACGTGTTTCGGAATGCTTCATCAAGCCGCAACACCCCACCAAAGAGTCAAACCAAATCTGCTATCTAACACCATGGGATATTGCCATGTTATCTATGCATTACATCCAAAAGGGCCTGCTATTCAAAAAGCCATCACCACCAAATAACCAACAAGATTTCATCCATAATCTGTTGGATAAGCTCAAACACTCACTTTCCCTCACACTTGTCCACTACTATCCCCTGGCTGGCCGTCTTGTCACCCACAAAACCCAAGACCCTCCCTCTTATGTTATTTTTGTTGACTGTAGAAATGGTCCTGGAGCTAGATTTATCCATGCAACTTTAGATATGACCATATCTGACATCCTCTCCCCCATTGATGTCCCACGCATTGTTCACTCTTTATTTGACCATGACAGAGCTGTCAACCATGACGGTCATACAATGCCTTTGTTGTCCATCCAAGTCACTGAACTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACTGTCTTGGTGATGGGATTTCTTACTGGAATTTCTTCAATACATTGTCCGAGATTTTTCAAGCTCAAGGCAGTGAATATGATGGTCCCATTTCGCACCAACCCATTCACAATCGCTGGTTTCCAGAGGGTTGTGGTCCCTTAATCAATCTCCCCTTCAAACATCATGACGAGTTTGTTAGCAGGTTTGAAGCACCCAAACTGAGAGAGAGAATCTTCCACTTCACAGCAGAATCCATAGCAAAACTGAAAGCAAAGGCCAACTCAGAGTCTGATACCACTAAAATCTCCTCATTCCAATCCTTATCAGCATTTGTTTGGAGATCCATAACTCGCGCCCGTCGCCTACCATATGATCAGAAAACCAATTGCAAGTTGGCCACAAACAACAGACCGAGAATGGAACCGCCTCTTCCGCAAGAGTACTTTGGAAACTCACTTCAAGCAGTTAGTGCACAAACGAGGGCAGGGGAATTGCTGGAGAATGATCTGGGATGGGCTGCATGGAAGGTGCATCTAGCTGTTGCAAACCACAACGACAGAATGGTGCGTCGGTGGCTCAAAGAGTGGTTACAATCTCCATTCATCTATCAATTTGATGGGTTCTTTGATCCGTACAGTGTGATGATGGGTAGTTCGCCGAGGTTCAACATGTATGGTAATGAATTTGGAACGGGGAAAGCTGTGGCAGTTAGAAGTGGGTATGCCCACAAATTTGATGGAAAGGTGACATCATTCCCAGGACATGAAGGAGGGGGAGGCATGGATTTGGAAGTGTGTCTTTCCCCAGATGCAATGAGCGCGTTGGAGTCAGATGAGGAATTTATGAATGCAGTTTCTGGGTCCGGTCTCCACTACTAG 1374 0.4556 MSSPAVRRVSECFIKPQHPTKESNQICYLTPWDIAMLSMHYIQKGLLFKKPSPPNNQQDFIHNLLDKLKHSLSLTLVHYYPLAGRLVTHKTQDPPSYVIFVDCRNGPGARFIHATLDMTISDILSPIDVPRIVHSLFDHDRAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHCLGDGISYWNFFNTLSEIFQAQGSEYDGPISHQPIHNRWFPEGCGPLINLPFKHHDEFVSRFEAPKLRERIFHFTAESIAKLKAKANSESDTTKISSFQSLSAFVWRSITRARRLPYDQKTNCKLATNNRPRMEPPLPQEYFGNSLQAVSAQTRAGELLENDLGWAAWKVHLAVANHNDRMVRRWLKEWLQSPFIYQFDGFFDPYSVMMGSSPRFNMYGNEFGTGKAVAVRSGYAHKFDGKVTSFPGHEGGGGMDLEVCLSPDAMSALESDEEFMNAVSGSGLHY* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01038 457 Gene3D - 226 442 IPR023213 -
Rops10g01038 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
Rops10g01038 457 FunFam Tryptamine hydroxycinnamoyl transferase 225 443 - -
Rops10g01038 457 Gene3D - 8 219 IPR023213 -
Rops10g01038 457 Pfam Transferase family 10 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01038 Rops-Chr10 22003395 22004768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01038 68 441 Monolignol Biosynthesis Gene Families AT5G48930 29.188 5.13e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01038 - - gmx:100787228 744.577