Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01036 ATGATGAGGTCGCCTAAGGTTGTACACATTTCAGAATGTTTTGTCAAGCCACTGCACCCCACAAAAGAGTCAAACCAAATCTGTTATCTAACACCATGGGATATTGCCATGTTATCTATGCATTACATCCAGAAGGGTCTGTTATTCAAAAAGCCACCACCACCACCACATAACCAACAAGATTTCATGGAGAATCTGTTGGATAAGCTCAAACACTCCCTTTCCCTCACCCTTGTTCATTTCTATCCACTGGCTGGTCGTCTTATTACCCATAAAACCCAAGACCCTCCCTCTTATGTTATTTTTGTTGACTGTAGAAATGGTCCTGGAGCCAGATTCATCTATGCAACTTTAGATATGACCATATCTGATATCCTTTCTCCCATTGATGTCCCACCCATTGCTCAGTCATTGTTTGACCATGACAGAGCTGTCAACCATGACGGTCATACAATGCCTCTGTTGTCCATCCAAGTCACTGAATTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACTGTCTTGGTGATGGGATTTCTTATTGGAATTTCTTTAATACATTGTCTGAGATCTTTCAAGCTCATGAATATGATGGTCCCATTTCACACCAACCCATTCACAGTCGCTGGTTTCCAGAGGGTTGCGGTCCATTAATCAATCTCCCCTTCAAACATCAAGACGAGTTTGTTAGCATGTTTGAAGCACCCAAGCTGAGAGAGAGAATATTCCACTTCACAGCAGAATCCATAGCGAAACTGAAAGCAAAGGCCAACTCAGAGTCTGAAACCACTAAAATCTCTTCATTCCAATCCTTATCAGCATTTGTTTGGAGATCCATAACTCGCGCGCGTTGCCTACCATATGATCAGAAAACAAATTGCAAGTTGGCCACAAACAACAGACCAAGAATGGAACCGTCTCTTCCGCAAGAATACTTTGGAAATTCACTTCAAGCAGTTAGTGCAGAAACGACAGCAGGGGAATTGCTTGAGAATAATCTGGGATGGGCAGCATGGAAGGTGCATCTGGCTGTTGCAAACCATAACGATGGAATAGTGCGACAGACGCTAAAAGAGTGGTTACAATCTCCACGCATCTATCAATTTGATGGGTTCTTTGACCCGTTTAGTGTGATGATGGGTAGTTCACCAAGGTTCAACATGTATGGGAATCAATTTGGAATGGGGAAAGCAGTGGCAGTTAGAAGTGGTTATGCCCATAAATTTGATGGAAAAGTGACATCATATCCAGGCCATGAAGGAGGTGGAAGCATAGATTTGGAAGTGTGTCTTTCACCAGATGCAATGAGCGCACTGGAATCTGACGAGGAGTTCATGAATGCAGTTTCAGTGTCCCCTCCCTACTCCTAG 1374 0.433 MMRSPKVVHISECFVKPLHPTKESNQICYLTPWDIAMLSMHYIQKGLLFKKPPPPPHNQQDFMENLLDKLKHSLSLTLVHFYPLAGRLITHKTQDPPSYVIFVDCRNGPGARFIYATLDMTISDILSPIDVPPIAQSLFDHDRAVNHDGHTMPLLSIQVTELVDGVFIGCSMNHCLGDGISYWNFFNTLSEIFQAHEYDGPISHQPIHSRWFPEGCGPLINLPFKHQDEFVSMFEAPKLRERIFHFTAESIAKLKAKANSESETTKISSFQSLSAFVWRSITRARCLPYDQKTNCKLATNNRPRMEPSLPQEYFGNSLQAVSAETTAGELLENNLGWAAWKVHLAVANHNDGIVRQTLKEWLQSPRIYQFDGFFDPFSVMMGSSPRFNMYGNQFGMGKAVAVRSGYAHKFDGKVTSYPGHEGGGSIDLEVCLSPDAMSALESDEEFMNAVSVSPPYS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01036 457 Gene3D - 2 216 IPR023213 -
Rops10g01036 457 FunFam Tryptamine hydroxycinnamoyl transferase 225 443 - -
Rops10g01036 457 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 448 - -
Rops10g01036 457 Pfam Transferase family 7 447 - -
Rops10g01036 457 Gene3D - 227 442 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01036 Rops-Chr10 21962938 21965231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01036 70 441 Monolignol Biosynthesis Gene Families AT5G48930 28.866 3.92e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01036 - - gmx:100775661 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01036 10 21962938 21965231 Rops10g01036 10 21962938 21965231 ECH