Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01032 ATGTATGCTTCTACTTCCTTTATTTCACCTCTCTTCCATGACCTTCTTCAGGACTTCCACTCAAGAAGGTTACTCCTTCACTCCCCACTTAACCAATCATCCAACTCAGCCAACTCTCCAACTTCCACAACCAGCCATGATTCAACAGAATCATATCTTGGAGATGGTAATTTTGATGCAAATGTTGTGATGGTACTCTCTGTCCTATTATGTGCTCTTATATGCTCACTGGGTTTGAACTCCATCATAAGGTGTGCATTAAGGTGTTCCAATTTAGTTGTCAATGACTTAGGGAACAACCCTCCAGCTAGAGTAGCCAACACAGGAGTCAAGAAGAAAGCTCTCAAGACTTTCCCTACAGTAAACTACTCAGCTGAGCTGAACCTGCCAACTTTGGATTCAGAGTGTGTGATATGCTTGTCAGAGTTCACTAATGGTGAAAGGGTGCGCATTTTACCCAAGTGCAACCATGGTTTCCATGTTCGTTGCATTGACAAATGGCTAAGTTCACACTCATCTTGCCCCAAGTGTAGACAGTGCCTAATTGAGACTTGTCAAAAGATTGTTGGGTGTAGTAGACAAGCTAGTTCATCACAACCACATATGTTGCCAGTGCCAGAAGCAATTATAACCATAGCACCATTAGAGCCAGAAGGTTTGGTGCGTAACTACAGGGAAAGTTAG 684 0.4298 MYASTSFISPLFHDLLQDFHSRRLLLHSPLNQSSNSANSPTSTTSHDSTESYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVNDLGNNPPARVANTGVKKKALKTFPTVNYSAELNLPTLDSECVICLSEFTNGERVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCSRQASSSQPHMLPVPEAIITIAPLEPEGLVRNYRES* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01032 227 SUPERFAMILY RING/U-box 115 183 - -
Rops10g01032 227 PANTHER RING-H2 FINGER PROTEIN ATL78 15 220 IPR044602 GO:0016567|GO:0016740
Rops10g01032 227 FunFam RING-H2 finger protein ATL73 99 183 - -
Rops10g01032 227 SMART ring_2 136 177 IPR001841 -
Rops10g01032 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 182 IPR013083 -
Rops10g01032 227 CDD RING-H2_EL5-like 135 178 - -
Rops10g01032 227 Pfam Ring finger domain 135 178 IPR001841 -
Rops10g01032 227 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Rops10g01032 227 MobiDBLite consensus disorder prediction 30 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01032 Rops-Chr10 21912902 21913836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01032 23 182 C3H Transcription Factor Family AT3G10910 44.643 1.27e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01032 K19040 - gmx:100787934 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01032 10 21912902 21913836 Rops10g01032 10 21912902 21913836 ECH
Rops1g01434 1 31850554 31851394 Rops10g01032 10 21912902 21913836 ECH
Rops2g00808 2 11629406 11630273 Rops10g01032 10 21912902 21913836 PCT