Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01030 ATGCCAAGTGGTAGAGTGATGGCAGTAAAGCAGGTTTTCCTCTCCAAACTCAACAATCGCTTAAGGGCTTGTTTGGAGTGCGAGATACATTTCTTGTCCTCTGTTAACCATCCCAATATTGTTCGCCTCCTTCACTTCTTCCAGGCTGATGGATGTGTGTACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTAGCTTCTTATATTCGAAGACATGGGAGAGTTCAACAACAAACGGCCAGAAGATTCATGCAGCAGCTTGGGTCTGGTCTGAAAGTATTGCACTCTCACGGCATCATTCACAGAGACTTGAAACCAGAGAACATTTTGCTATCAAGCCATGGGGCTGATGCGGTGCTAAAGATAGCTGATTTTGGCCTCTCGAGGAGAACTGCACGCCCAGGTGAGTACGTTGAGACAGTTTGTGGTTCTCCATTATACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGTAGACATGTGGAGTGTTGGGGCCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTAAGGGCAGAAATAATGTTCAGCTGTTGAAAAACATCAAATCCTGTACCTGTCTTCCATTTTCTCAACTGATTCTTTCAGGATTGGATCCTGACTGTCTTGATATTTGTTCAAGACTACTATGCTTAAATCCAGTGGAGCGCCTATCTTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAAATTGATGGGAACTTGA 744 0.4368 MPSGRVMAVKQVFLSKLNNRLRACLECEIHFLSSVNHPNIVRLLHFFQADGCVYLVLEFCAGGNLASYIRRHGRVQQQTARRFMQQLGSGLKVLHSHGIIHRDLKPENILLSSHGADAVLKIADFGLSRRTARPGEYVETVCGSPLYMAPEVLQFQRYDDKVDMWSVGAILFELLNGYPPFKGRNNVQLLKNIKSCTCLPFSQLILSGLDPDCLDICSRLLCLNPVERLSFDEFYWHSFLQRKLMGT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01030 247 Gene3D Transferase(Phosphotransferase) domain 1 1 246 - -
Rops10g01030 247 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 3 241 IPR045269 GO:0004674|GO:0006914
Rops10g01030 247 FunFam - 104 246 - -
Rops10g01030 247 Pfam Protein kinase domain 3 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01030 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Rops10g01030 247 SMART serkin_6 3 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01030 247 SUPERFAMILY Protein kinase-like (PK-like) 3 242 IPR011009 -
Rops10g01030 247 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01030 Rops-Chr10 21881471 21884803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01030 3 233 CBL-interacting serine-threonine protein kinases AT2G30360 38.819 1.11e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Rops10g01030 Pkinase 5.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01030 - - lja:Lj1g3v1289070.2 453.751