Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01028 ATGAGTTTGGTGGATTCAGAATGCTCAGAGGAAGGTTCAGGGCTTCTAGAGCCTCCTGATCCTGATGTTCTCGAAATTGATCCTACTTCTCGCTACATTAGGTATAAAGAAATACTCGGCAAAGGAGCTTTCAAGACTGTTTACAAGGCATTTGATGAAGTCACCGGACTTGAAGTTGCGTGGAGCCAAGTTCGGATTGATGAGGTATTACAGTCACCGGGTGACCTAGAGAGGCTGTACTCGGAAGTGCATCTCTTGAAATCATTGAGGCACAGTAACATAGTACGGTTCTACAATTCATGGATTGATGATAAGCACAGGACTGTTAACATGATTACTGAGTTGTTCACCTCAGGGAGCCTCAGACAGTATCGTAAGAAACACAAGAAGTTTGACATGAAGGCTATTAAAGGATGGGCAAGACAGATCTTAATGGGCTTAGACTACCTCCACAGTCGCAACCCACCTATTATACATAGGGACCTGAAGTGTGATAATATATTCGTAAATGGTCACCTAGGAGAAGTTAAAATTGGAGATCTGGGGTTGGCAACTCTCTTAAAGAAGACTAATGCCCAGACTGTAATTGGAACCCCGGAGTTTATGGCACCTGAACTGTATGATGAAAGTTATAATGAATTAGCCGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCTAATGCTCTTTCTAAAGTCAGAGATCCAGAAATAAAATCATTTATTGAGAAATGTATTGTCCCGGCTCCTCAAAGATCGTCAGCCAAAGAGCTTCTGATGGACCCTTATCTCCAAGTAAATGGCTTGTCAAAGAATCATCCTCTTCCATTACCAGATATTGTTCTTCCCAAATTGGGAGCCTTTGAAAATCGTTGTCTAATGTCAGAAGGTCCTGCTAGTGCACGTAATAGATCCAATTCAATGGATCTCGGTGATACCAGTGAGCTACCGTTGGTCACTTTATTTTACAATTCTGTCGATGATGCGTCATCTTCTATATTTGTTGAGATTCGAAGGTTGAAGGGAGGTGATATATTTTTTCTAAAAGGAGCAAAAAATGACGAGAACTCTGTATCATTGGTTCTCCGGATAGCTGATCAGAGTGGCCGGGCAAGAAATATCCATTTCATATTCTACCTCGACAGTGATACTGCCATCTCAATTTCAAGTGAAATGGTTGAGCAACTTGAACTTGCCGAGCAGAATGTTAAATTCATAGCAGAGTTAATTGATCTATTATTAATAAATCTGGTTCCCGATTGGAAACCTTGTGTAGCGATTGATCATTTAGTTTCTCCAAATGTTAAACGGACTTGTTTGAGCCAACGGAAAGACTCAGAGTTGACAAAATACAAACAATGCTCAGAAGATTTTAGTCAAAGTGTGGCTGAAGATGGAGGTCCCTTGACCTCACATGGAAGATCAGCAGAAAATGAAAACCATGATAATGTGACTTTTTACGAGGCTTTATCTCATTCAAGCTTTGATCCTCAAAGAGCAACAAAGACAGATGATTTGTGTTCTGAGAAGTCATATACTTCTGCAACATCTGACTTCAATGATAAGAATCTTTCAGCAGTTTCATTCATGTCTGCTAAATCAGGTTTTTCAGACTTCAACTTTCCTACAGGGAACAGAGGGAGTCAAACCTCGCTTGCATCTGAAATCAGGGCGTCAACTGATTATAGGAGCAAGTTTCCATACATGGAGAGCAATGGTATGGTGAAATTCTTAAATTATTCCTTTAGTGGTTCCTCCTTGTCTGAAGCTGAGGATGAGTTGAGATTAGAGTTAGAGATGATTGAACAGCAATATCAAGAGGCAATTAAAGATTTGTCCAAAAGAAAATGCCAGGCCATCACGGAGATCAGAAGGAGGCAGTCATAA 1965 0.4041 MSLVDSECSEEGSGLLEPPDPDVLEIDPTSRYIRYKEILGKGAFKTVYKAFDEVTGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLKSLRHSNIVRFYNSWIDDKHRTVNMITELFTSGSLRQYRKKHKKFDMKAIKGWARQILMGLDYLHSRNPPIIHRDLKCDNIFVNGHLGEVKIGDLGLATLLKKTNAQTVIGTPEFMAPELYDESYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPNALSKVRDPEIKSFIEKCIVPAPQRSSAKELLMDPYLQVNGLSKNHPLPLPDIVLPKLGAFENRCLMSEGPASARNRSNSMDLGDTSELPLVTLFYNSVDDASSSIFVEIRRLKGGDIFFLKGAKNDENSVSLVLRIADQSGRARNIHFIFYLDSDTAISISSEMVEQLELAEQNVKFIAELIDLLLINLVPDWKPCVAIDHLVSPNVKRTCLSQRKDSELTKYKQCSEDFSQSVAEDGGPLTSHGRSAENENHDNVTFYEALSHSSFDPQRATKTDDLCSEKSYTSATSDFNDKNLSAVSFMSAKSGFSDFNFPTGNRGSQTSLASEIRASTDYRSKFPYMESNGMVKFLNYSFSGSSLSEAEDELRLELEMIEQQYQEAIKDLSKRKCQAITEIRRRQS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01028 654 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Rops10g01028 654 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Rops10g01028 654 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 22 650 - -
Rops10g01028 654 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01028 654 Gene3D - 382 477 - -
Rops10g01028 654 FunFam Serine/threonine-protein kinase WNK8 382 479 - -
Rops10g01028 654 Gene3D Transferase(Phosphotransferase) domain 1 116 295 - -
Rops10g01028 654 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Rops10g01028 654 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01028 654 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g01028 654 CDD STKc_WNK 31 290 - -
Rops10g01028 654 SUPERFAMILY Protein kinase-like (PK-like) 34 340 IPR011009 -
Rops10g01028 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Rops10g01028 654 Coils Coil 613 637 - -
Rops10g01028 654 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01028 Rops-Chr10 21870413 21874132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01028 133 494 MAP Kinase Kinase Kinase AT1G49160 63.812 8.81e-170 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Rops10g01028 Pkinase 1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01028 K08867 - gmx:121175054 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01028 10 21870413 21874132 Rops10g01028 10 21870413 21874132 ECH
Rops2g00804 2 11577930 11586145 Rops10g01028 10 21870413 21874132 PCT