Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01027 ATGGTGAGAGACGATTTATGCATCACGGTTCCCAGCTTCTTCAGATGTCCAATTTCTTTAGATGTCATGAAATCCCCTGTGAGTCTCTGCACTGGAGTAACCTACGACCGTTCCAGCATCCAACGTTGGCTTGACGAAGGTAACAACACTTGTCCCGCAACCATGCAGGTTCTTCAAACAAAGGATTTCGTTCCTAACCGTACTTTACATAGCCTCATCCAGATCTGGACAGACTCGGTTAAACACCCAGTCGACCCGCCTGAGTCACTTACCCAGGACCAAGTCCTCCGAGCAATCGCCGACCTGGAGGACCATAATCAAAACCGGTTCGGTTCGATCACGAAAGTGGTTCGGTTCGCTGAAGATTCTGAACCAAACCGAGCCTTCCTCGCAAAAATTAACGGCTTCGTGGACCTGCTCGTTGGTTTCCTCGACAATGTCGAAAACGGAGTAACTGACAACGTTGAATTTCTCGAACAAGTTGTAATTGCATTGGGTTTGATTCTCGATCAAATCGAAGATCGCGTGTTGCTGAAAAACAGTACATTGAAGGGAAAGAATCATAGCTTGGATTCTCTGCTTCTCGTTCTGAAACATGGAAGCTCCGATTCGAGGATTGCCTCTGCTAGGGTTCTGAAATTCATCGCCATAGACGCAGGGTCAATGCTTTTAATCGCTGAAAAGGAAGGCATAATAACAGAATTGCTGAATTTAACTGCAACAGAGAAAGATCCGTCGCTAATCGAGAACTCCCTGGCAAGCTTGGTGGCAATTTCCACGCCGAAACGGAACAAGTTGAAACTGGTGAACCTTGGAGCAATGAAGATTCTATCGAAGTTGCTAACAGACTCCAAAACAAGCGTGGCGGTGGTGGAGAAGGTTTTGAAGCTGGTTGAAAAGGCGTCGTCTACGAGGGAAGGGAGAAAGGAGATATGTGACGACGCGTCGTTTGTGACGGCGATACTGAACAAGGTTATGAAGGTGTCACACGTGGCAACGGAACATGCTTTGACAACGTTGTGGGCTTTGTGTTATTTGTTTCGGGATCGTAAGGCACAAGAAGCGGTTACGAATGCCAATGGTTTGACGAAGATTCTGTTGCTTATGCAGAGTAATTGTTCACCTCAAGTTCGTCAAATGTGCACCGATTTGCTTAAGATTTTTCGGGTTAACTCAAAATCGTGTCTTTCTTCCTATGAAACCAAGACAACACATATCATGCCCTTTTGA 1230 0.461 MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDEGNNTCPATMQVLQTKDFVPNRTLHSLIQIWTDSVKHPVDPPESLTQDQVLRAIADLEDHNQNRFGSITKVVRFAEDSEPNRAFLAKINGFVDLLVGFLDNVENGVTDNVEFLEQVVIALGLILDQIEDRVLLKNSTLKGKNHSLDSLLLVLKHGSSDSRIASARVLKFIAIDAGSMLLIAEKEGIITELLNLTATEKDPSLIENSLASLVAISTPKRNKLKLVNLGAMKILSKLLTDSKTSVAVVEKVLKLVEKASSTREGRKEICDDASFVTAILNKVMKVSHVATEHALTTLWALCYLFRDRKAQEAVTNANGLTKILLLMQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYETKTTHIMPF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01027 409 Gene3D - 95 388 IPR011989 -
Rops10g01027 409 PANTHER WDSAM1 PROTEIN 9 397 IPR045185 GO:0061630
Rops10g01027 409 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Rops10g01027 409 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Rops10g01027 409 SUPERFAMILY RING/U-box 6 81 - -
Rops10g01027 409 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Rops10g01027 409 SUPERFAMILY ARM repeat 108 391 IPR016024 -
Rops10g01027 409 CDD RING-Ubox_PUB 11 63 IPR045210 -
Rops10g01027 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 94 IPR013083 -
Rops10g01027 409 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01027 Rops-Chr10 21842528 21844084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01027 1 409 U-box Gene Family AT5G64660 52.619 9.09e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01027 - - gmx:100799627 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01027 10 21842528 21844084 Rops10g01027 10 21842528 21844084 ECH
Rops10g01027 10 21842528 21844084 Rops2g00801 2 11513747 11515362 ECH
Rops2g00801 2 11513747 11515362 Rops10g01027 10 21842528 21844084 PCT